PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G087900.1.p
Common NameLOC101765728, SETIT_019554mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 224aa    MW: 24184 Da    PI: 10.199
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G087900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-19110164256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++t  q   Le+ F++++ +s++e++eLA+++gL+ rqV vWFqNrRa+ k
  Seita.1G087900.1.p 110 RKKLRLTGAQAAMLEDSFRSHNILSHAEKQELARRVGLSARQVEVWFQNRRARTK 164
                         677889***********************************************98 PP
2HD-ZIP_I/II110.98.6e-36110199190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+  q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+rL+++ ++Lr++
  Seita.1G087900.1.p 110 RKKLRLTGAQAAMLEDSFRSHNILSHAEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLHRWCDRLTDENARLRRDLADLRAS 199
                         69*************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.038106166IPR001356Homeobox domain
SuperFamilySSF466891.75E-18108175IPR009057Homeodomain-like
SMARTSM003891.3E-15108170IPR001356Homeobox domain
CDDcd000868.44E-13110167No hitNo description
PfamPF000461.8E-16110164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-18110164IPR009057Homeodomain-like
PRINTSPR000311.9E-6137146IPR000047Helix-turn-helix motif
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PRINTSPR000311.9E-6146162IPR000047Helix-turn-helix motif
PfamPF021832.3E-7166198IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.7E-15166209IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSSVTTAGSA EEHPVSVEEF VGAHLSLGIG GGEGSSRSSP RQQGRPRTVQ LFGEVLSLQV  60
DDECHDGARR REPAAAAGRK KRDHSGSGAR QNKKARTFQD GGDGGGGGGR KKLRLTGAQA  120
AMLEDSFRSH NILSHAEKQE LARRVGLSAR QVEVWFQNRR ARTKLKQTEV DCELLHRWCD  180
RLTDENARLR RDLADLRASA TARLAVCAAC CDKQVAARAG EMA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G087900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954712.11e-160putative homeobox-leucine zipper protein HOX26
TrEMBLK3YZ461e-158K3YZ46_SETIT; Uncharacterized protein
STRINGSi019554m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-31HD-ZIP family protein