PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G088000.1.p
Common NameLOC101773135, SETIT_018305mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 221aa    MW: 23994.7 Da    PI: 10.1873
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G088000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-19109163256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++t  q   Le+ F+ ++ +s++e++eLA+++gL+ rqV vWFqNrRa+ k
  Seita.1G088000.1.p 109 RKKLRLTGAQAAMLEDSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTK 163
                         677889***********************************************98 PP
2HD-ZIP_I/II111.17.2e-36109198190
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         +kk+rl+  q+++LE+sF++++ L++ +K+elar++gl++rqv+vWFqnrRARtk+kq+E+d+e L+r++d+l++en+ L+++ ++Lr++
  Seita.1G088000.1.p 109 RKKLRLTGAQAAMLEDSFRAHNILSHAEKQELARRVGLSARQVEVWFQNRRARTKLKQTEVDCELLRRWCDRLADENAGLRRDLADLRAS 198
                         69*************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.989105165IPR001356Homeobox domain
SuperFamilySSF466891.4E-18107174IPR009057Homeodomain-like
SMARTSM003892.0E-15107169IPR001356Homeobox domain
CDDcd000861.62E-13109166No hitNo description
PfamPF000462.4E-16109163IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.9E-18109163IPR009057Homeodomain-like
PRINTSPR000311.9E-6136145IPR000047Helix-turn-helix motif
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PRINTSPR000311.9E-6145161IPR000047Helix-turn-helix motif
SMARTSM003409.2E-11165206IPR003106Leucine zipper, homeobox-associated
PfamPF021832.4E-7165197IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSSVTTAGSA EEHSVSVEEF AGTRLSLGIG GGEGSRPRTV QLFGEVLSLQ DDDDDDDDRD  60
AARHREPAAP AGRKKRDAST AAVGSRQNKK ARTFQGGDRR SPPSGGGGRK KLRLTGAQAA  120
MLEDSFRAHN ILSHAEKQEL ARRVGLSARQ VEVWFQNRRA RTKLKQTEVD CELLRRWCDR  180
LADENAGLRR DLADLRASAR LAVCAACRDK QVTARAGEMA *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G088000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951890.11e-157putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX63e-50HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLK3YVK91e-155K3YVK9_SETIT; Uncharacterized protein
STRINGSi018305m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.13e-27HD-ZIP family protein