PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G128200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 156aa    MW: 17486.6 Da    PI: 4.8944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G128200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.84.7e-15121442126
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                         ppG+ F+P d+elv ++L ++++g++  ++   vi++    ++ Pw+L k++   ++ + yfF++++   a   r+ r    +g+W ++ +
  Seita.1G128200.1.p  12 PPGINFRPDDDELVEFFLLPRLRGEPswFPGVVVIDDDSAANTLPWNLLKRHGLaDDGNAYFFVHTNDVVA---RQDRyCPGDGTWVSQRQ 99 
                         8*************************776665679999**********854444155689*****999876...77775778*****9999 PP

                 NAM  89 dkevlskkgelvglkkt.Lvfykgrapkge......ktdWvmhey 126
                         +    +  ge++  k+t L +  gr +k+       +t W+m ++
  Seita.1G128200.1.p 100 ESGSSCICGETIKWKTTnLNLQMGRGKKALpetatyNTCWFMSNF 144
                         887777777887777654788755554433334445899999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-185148IPR003441NAC domain
PROSITE profilePS5100517.25611155IPR003441NAC domain
PfamPF023652.0E-1012144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MLTKAAQILG HPPGINFRPD DDELVEFFLL PRLRGEPSWF PGVVVIDDDS AANTLPWNLL  60
KRHGLADDGN AYFFVHTNDV VARQDRYCPG DGTWVSQRQE SGSSCICGET IKWKTTNLNL  120
QMGRGKKALP ETATYNTCWF MSNFGNFSDA FDIFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G128200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.13e-40NAC domain-containing protein 48
TrEMBLA0A368PLW51e-113A0A368PLW5_SETIT; Uncharacterized protein
STRINGSi019235m7e-86(Setaria italica)
STRINGSi019812m7e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946