PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G129100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 362aa    MW: 39993.6 Da    PI: 4.8252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G129100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.11.7e-19521792128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                         ppG+ F+P d+elv ++L ++++g++  ++   vi++    ++ Pw+L k++   ++ + yfF++++++ a   r+ r    +g+W ++ +
  Seita.1G129100.1.p  52 PPGVNFRPDDDELVEFFLLPRLRGEPswFPGVVVINDDSAANTLPWNLLKRHGLvDDGNAYFFVHTNNEVA---RQDRyCPGDGTWVSQRQ 139
                         8*************************776665679*************754433266699*****999876...77775778*****9988 PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +    +  +++ ++ ++ L +  gr +kg +  Wvmhey+l
  Seita.1G129100.1.p 140 ESGSSCIcGETIKWRRTNLNLQMGRGKKG-SMGWVMHEYTL 179
                         766555526666778889*********98.899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-2537194IPR003441NAC domain
PROSITE profilePS5100523.73851195IPR003441NAC domain
PfamPF023652.3E-1452179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGNLNPTETH SLPIVIKVQP LLLSPDSSPL QETGRNHHRT MSTKAAQILG HPPGVNFRPD  60
DDELVEFFLL PRLRGEPSWF PGVVVINDDS AANTLPWNLL KRHGLVDDGN AYFFVHTNNE  120
VARQDRYCPG DGTWVSQRQE SGSSCICGET IKWRRTNLNL QMGRGKKGSM GWVMHEYTLT  180
EPPCPFLKIC HVTFTGHGKW RKRVPDDESD CQATGEPASK RPRVAVTAAA VDTSVPAIFQ  240
QEHSLPFPID QGISAMTHQQ QMVMMPMPDD KNDCQAANSS SATCANGSTM TTADQDSGAA  300
HAYAGEESAQ DTVEETLEWF RLDGKDLLAD AEPTAEQQYG LDQQDQLFWR SIGVDTENIV  360
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G129100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.11e-60NAC domain-containing protein 48
TrEMBLA0A368PLX40.0A0A368PLX4_SETIT; Uncharacterized protein
STRINGSi019546m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.16e-09NAC-domain protein 101