PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G167100.1.p
Common NameLOC101770325, SETIT_017327mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 420aa    MW: 47100.2 Da    PI: 5.667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G167100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044467223
                        EETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                        +C+dCgk+++++ +   H ++  H
  Seita.1G167100.1.p 44 VCSDCGKPCRSQTEVDLHTKRtgH 67
                        8***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
Gene3DG3DSA:1.10.8.101.1E-1093162No hitNo description
SuperFamilySSF469349.25E-16105171IPR009060UBA-like
PROSITE profilePS5003010.74117158IPR015940Ubiquitin-associated domain
CDDcd142901.34E-19117165No hitNo description
SMARTSM001650.0033119157IPR015940Ubiquitin-associated domain
PfamPF006275.7E-6119155IPR015940Ubiquitin-associated domain
SuperFamilySSF1435033.4E-28308415IPR018997PUB domain
CDDcd104619.19E-65313419No hitNo description
PfamPF094091.4E-23326397IPR018997PUB domain
SMARTSM005803.0E-25329392IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAGLSLRCGD CGAQLRSVEE AQAHAEATNH ANFVESTEAV LNLVCSDCGK PCRSQTEVDL  60
HTKRTGHKNF ADKTAEAAKP IDLEAPLKPA SSSDATDVDA PASASASEEP QEMVVPEVNK  120
EMLADLEAMG FATARATRAL HFSGNSTIEG AINWLSEHQE DADIDEMPLV PANSKTEDNK  180
PSLTPEEMKI KAQELRERAR KKKEEEERRM EREREKERIR IGKELLEAKR IEEQNERKRM  240
IELRRLEKEE EKRAREKIRQ KLEEDKAERR RKLGLPPEDP AASKPSAPPP VEEKKSALPV  300
RPATKAEQMR DCLRNLKQQN KDDDAKVKRA FQTLLTYIGN VAKNPDEEKF RKIRLTNATF  360
QERVGNLHGG IEFLELCGFE KLEGNEFLFL ARDKVDKAIL NTAGAELNSA ITNPFFGVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G167100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550290.0BT055029.1 Zea mays full-length cDNA clone ZM_BFc0028E22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952539.10.0caldesmon
TrEMBLK3YST20.0K3YST2_SETIT; Uncharacterized protein
STRINGSi017327m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517