PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G183600.1.p
Common NameSETIT_019248mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 458aa    MW: 49481.8 Da    PI: 4.9267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G183600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.78.1e-2261391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgk 88 
                         lppG+ F P+de  v +yL +++ g +l+++  + + d +++ P++L  + +++++e +fF++ + + ++g+r++r  +  g W+  +t  
  Seita.1G183600.1.p   6 LPPGILFAPEDEVAVGHYLLPRLLGWPLPVDGLVLDDDPLSAPPQELL-ERNGRKEEAFFFAEGQARCRKGTRQKRtCAGGGWWEgqKTCA 95 
                         79****************************99999************7.456678899******************545566676333333 PP

                 NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + + l+     ++e+ + kk L f+   a k  +t Wvmhey++
  Seita.1G183600.1.p  96 EGDKLHVpgggGEEAAWRKKALNFHCSGAGKKGSTGWVMHEYAV 139
                         4333333688777889*********766666679********86 PP
2NAM61.13.7e-1917029411128
                 NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dkevlsk... 95 
                         d ++v +yL ++v g++l+++  i + d +++ Pw+L  + ++++++ +fF+  + k+ +g+r++r  +  g+W+   +  d e l+    
  Seita.1G183600.1.p 170 DGDVVAHYLLPRVLGQPLPMDGLILDDDPLTAPPWELL-ERNGRKEDAFFFALGQVKSGKGSRQKRtCAGGGFWNGERTcvDGEELRVpgl 259
                         889*****************999**************7.445677899******************77789***94433223333333577 PP

                 NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +  + + kk L f +g a+kg +t Wvmhey++
  Seita.1G183600.1.p 260 ggkEVVVAWRKKALSFQDGGAEKG-STGWVMHEYAI 294
                         6433333789************98.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-293157IPR003441NAC domain
PROSITE profilePS5100525.6826158IPR003441NAC domain
PfamPF023651.9E-137138IPR003441NAC domain
PROSITE profilePS5100520.821160313IPR003441NAC domain
SuperFamilySSF1019411.27E-24170313IPR003441NAC domain
PfamPF023651.5E-10170293IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAAAGLPPGI LFAPEDEVAV GHYLLPRLLG WPLPVDGLVL DDDPLSAPPQ ELLERNGRKE  60
EAFFFAEGQA RCRKGTRQKR TCAGGGWWEG QKTCAEGDKL HVPGGGGEEA AWRKKALNFH  120
CSGAGKKGST GWVMHEYAVT APEDLARSPL RLYHIRLSSY GRKQSGAMED GDVVAHYLLP  180
RVLGQPLPMD GLILDDDPLT APPWELLERN GRKEDAFFFA LGQVKSGKGS RQKRTCAGGG  240
FWNGERTCVD GEELRVPGLG GKEVVVAWRK KALSFQDGGA EKGSTGWVMH EYAITAPDHL  300
AEPQLMLYRI RFSDHGRKRK RGEADPCAGE AAPAAARRRV AEDTLLHIDM LTSSSDPIPI  360
CSSTVLADEA DVDCVNGAEH QAAPVTVSAG QDLIPGDIDT SWDMGFLENI DIDELLRSIE  420
DPSSPNRAVL PAVTDTGAYV DADDSFFPVP NQFFAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315321GRKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G183600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A368PM560.0A0A368PM56_SETIT; Uncharacterized protein
STRINGSi019248m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-10NAC domain containing protein 41