PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G186800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 788aa    MW: 90742 Da    PI: 7.5486
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G186800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1865.6e-2755144190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                         +fY +YA +vGF+vr++  +ks+++gei ++++vCs+eg+++ +k++ ++++++++ trtgCka+l+v++++ + k+ev+ +e +HnH+l+
  Seita.1G186800.1.p  55 EFYLNYAWKVGFTVRRECANKSRKSGEISSSKYVCSREGFKSMDKRT-NRSKTPQPDTRTGCKACLTVRRNNdSTKYEVYGFEPKHNHPLV 144
                         6******************************************9999.9**********************999***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-2355144IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.75470144IPR003657WRKY domain
PfamPF105514.9E-17274352IPR018289MULE transposase domain
PROSITE profilePS509669.705528575IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-4550577IPR006564Zinc finger, PMZ-type
PfamPF044347.6E-4552571IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MGSTSREPPP DPPAPPPARA GDTEARWSIA SLQEAAGDYT PRLGREFDSE LEAYEFYLNY  60
AWKVGFTVRR ECANKSRKSG EISSSKYVCS REGFKSMDKR TNRSKTPQPD TRTGCKACLT  120
VRRNNDSTKY EVYGFEPKHN HPLVVPSCAN PLQRKLVDIQ SAQANNSSNV TSACEPESRN  180
SVIGDNAVTS REWQRPLRTR RQREIEYGEA AALLNYLQDQ SRAGPLFYHA VQLDAEDKIA  240
NIFWADVKMI TDFSQFGDVV SFDIVSRDSM DLRPFASFVG FNNYGETVLL GMALMYDGTV  300
ESFHWLFDTF LNAMSGRAPR TIFYRQDAYV GMAISMVMPD TCHALCTWHL KQTAKSNINY  360
LIKRDCDFMK EFKACINYYE EERELFTSWE VMINKYSLHG NVWLQKVFEE KEKWAGPYMK  420
WTFSAGMKNT QLNERLHSDV GDYLRTDVDI TLFMKHLQKV VDDRRYTELE IEFSSKLKLP  480
DFKIRAPILI QASEAYTDMI FQLFQEEYEE FQSAYIVSRD ESGPCREYIV AILDKERKHK  540
VYGNPSEQTV LCSCRKFETL GFLCSHALKI LDTMDIKYLP HRYILKRWTK YARCLTSQVD  600
DRKVQEDTTL EFSNRYQYLC PVFVRLVARA SVCEESYRAL EQCSVEMSKK VEGIIRKQTS  660
IDASACEPDT VDIQISLSVS ATDNESEHAM NYSSNKRSKK TKKKGHKDKS QTRSCIKKGL  720
QNKKTLQLEQ PAVQFFMLDT PTQTVQDSLR VISSLSFIIV VDLHYMSLVV EHCARIYDEK  780
YPCVNPH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G186800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952692.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368PMS70.0A0A368PMS7_SETIT; Uncharacterized protein
STRINGORGLA02G0169200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-94FAR1-related sequence 5