PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G189800.1.p
Common NameLOC101752885, SETIT_016477mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 715aa    MW: 80787 Da    PI: 6.6511
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G189800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.63.7e-2293179290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek +  +++ + ++trt+C+a+++ + +++g+w+v++l+++HnH+la
  Seita.1G189800.1.p  93 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGLKEGEKLT--DANFNDPHTRTNCRAMVRFRVNDHGEWKVIRLVSDHNHNLA 179
                         7****************************************99988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1993179IPR004330FAR1 DNA binding domain
PfamPF105515.6E-26303397IPR018289MULE transposase domain
PROSITE profilePS509669.767586622IPR007527Zinc finger, SWIM-type
PfamPF044343.8E-4594619IPR007527Zinc finger, SWIM-type
SMARTSM005750.0024597624IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MSPVESAAAG ADQAGERAVV PHEDGVGGGG GDVATTEAQV AMVVSTSGDE RRVEYGDDAE  60
NEGEEAATVQ GSKEGTEELL RKVVYSEEAA YKLYCDYGHR MGFSIRKGKQ SYFTGTKRIR  120
TKDYFCSKEG LKEGEKLTDA NFNDPHTRTN CRAMVRFRVN DHGEWKVIRL VSDHNHNLAR  180
PEERHLLRSA RSLIAGRSSS VEAMLYAGYQ VQGGAPQLPA GSTSATNNVD NSKQHLLLGY  240
GAAVKTLTVG TGDLQSLVSY LKTRANEDAM FYWDVQLDQS GRMTNFFWRD GRSRIDYDCF  300
GDVIVFDSTY RLSKQNLICA PFVGVNHHWQ TTMYGCALLA DESMSAFVWL FKSFLESMGN  360
RHPQSIFTNL DQVVSKAIEE VFPNTCHRIA HWHIQKNAHS RLGYLNVSKG FNKMFTKCIQ  420
GCDSETEFEE TWAQMIHEFK LQDNKWLKKL YKLKQKWCSA LNKGNFDGGV EYEPQCDTMS  480
SIFNSVADKL TSLSAIAVTV DKQSEDWREK ELEEDTRCLQ KPPACIIKHS DILNHAAKVY  540
THRIYKLFET DFLDGCGATK FKELPCEDNN THQFEMTMQG RGSRVCTVRL NMSTMELSCS  600
CSKFETMGLL CPHALKALSI KNICKIPESY ILKRWTKDAK KWVFNPKQYE SSYQECMDDD  660
AAYCNYVMRY AYDLVTKSQG QEELRKALWE TLESGEKELE KHLGNGTQYA AYAT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G189800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704124.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLK3YQD40.0K3YQD4_SETIT; Uncharacterized protein
STRINGSi016477m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-83FAR1-related sequence 5