PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G193200.1.p

Common Name

LOC101776521, SETIT_018368mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 205aa MW: 22627.1 Da PI: 6.2198

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G193200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.3	4.3e-34	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGf+F P+de+lv ++L++kv++ +++ ++i++v +++++Pw+L+ ++ + ++wyfFs++++ +r+ +gyW+ g d++ Seita.1G193200.1.p 7 LPPGFHFFPSDEDLVIHFLRRKVANLPCRP-DIIPTVLLHHYNPWELNGTALQAGNQWYFFSHAAQ--------SRTSPNGYWNPIGADET 88 79***********************999.99**********965566789**9865........678899******* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s +g vglkktL+f +g+ +kg kt+W+mhey+l Seita.1G193200.1.p 89 VTS-SGCIVGLKKTLIFCTGEPSKGFKTNWIMHEYHL 124 .999****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-45	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	41.634	7	168	IPR003441	NAC domain
Pfam	PF02365	2.8E-21	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGGATNLPPG FHFFPSDEDL VIHFLRRKVA NLPCRPDIIP TVLLHHYNPW ELNGTALQAG 60 NQWYFFSHAA QSRTSPNGYW NPIGADETVT SSGCIVGLKK TLIFCTGEPS KGFKTNWIMH 120 EYHLQDGGYN VSGSSTSSSS SSSRKSQRKR VHSSTESNSW VVCRVFESSC GSQVSFHDEG 180 TELSCLDEVF LSLDDYDEVS LPNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-33	6	173	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-33	6	173	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-33	6	173	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-33	6	173	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-33	6	173	19	173	NAC domain-containing protein 19
3swm_B	1e-33	6	173	19	173	NAC domain-containing protein 19
3swm_C	1e-33	6	173	19	173	NAC domain-containing protein 19
3swm_D	1e-33	6	173	19	173	NAC domain-containing protein 19
3swp_A	1e-33	6	173	19	173	NAC domain-containing protein 19
3swp_B	1e-33	6	173	19	173	NAC domain-containing protein 19
3swp_C	1e-33	6	173	19	173	NAC domain-containing protein 19
3swp_D	1e-33	6	173	19	173	NAC domain-containing protein 19
4dul_A	1e-33	6	173	16	170	NAC domain-containing protein 19
4dul_B	1e-33	6	173	16	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G193200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952810.1	1e-152	NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-60	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	K3YVS2	1e-151	K3YVS2_SETIT; Uncharacterized protein
STRING	Si018368m	1e-151	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	8e-61	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Seita.1G193200.1.p
Entrez Gene	101776521

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]