PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G220700.1.p
Common NameLOC101781250, SETIT_016245mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 933aa    MW: 104096 Da    PI: 9.4328
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G220700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.66.1e-102953761097
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +  +  l +p   a + +    +++++ led++ r+ +v+l  +  +g+  + +GW  Fv+++ +k g+f++F+++ r++f   v++f
  Seita.1G220700.1.p 295 NYFEEFLLIPPAVAPKLEDL--TNRDVYLEDSEKRRSKVRL--SVVDGSLAFHQGWDIFVSDHLIKLGEFLLFEYTARKRF--SVRIF 376
                         44555688999998888655..4568***************..99999999************************998999..77776 PP
2B342.31.4e-138439241195
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         +++++l lpk+ +++ ++k +    ++l+d+++r W+v +    ++  + lt+GWk+Fv  n+L++gD + ++ +  ++ elv++
  Seita.1G220700.1.p 843 TTRKWLELPKSLFDTVKQKRHDRNVIMLKDPTNRLWTVLY--HENPVFVGLTAGWKHFVAGNNLQTGDLCKLTKEA-DGDELVFS 924
                         4567899******999888888899***************..*******************************444.55556655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.278286379IPR003340B3 DNA binding domain
CDDcd100171.87E-9287376No hitNo description
Gene3DG3DSA:2.40.330.106.4E-14288379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-13288381IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-4289379IPR003340B3 DNA binding domain
PfamPF023627.9E-8293376IPR003340B3 DNA binding domain
PROSITE profilePS5086310.898833931IPR003340B3 DNA binding domain
SMARTSM010194.0E-5834931IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-13834925IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-13840929IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-10843924IPR003340B3 DNA binding domain
CDDcd100172.84E-12844929No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 933 aa     Download sequence    Send to blast
MGKQKEGRAS SNKNMMADDR EKKNKTTTWN GHNKVKSSKK VSTTSLEKMR KKEKLCNANN  60
KKKMQICDDE EGKNRKESTT ISERKDKEKM NKTHKEKMRA ANSKERKILS GHDGVKKSVE  120
VSTAFFGKEK KGKRLNKTIN LELQSDEDEE EGVWNYDGKV KNGKVATAFS EEEKRKRRPN  180
NNTEKETAAL TPAVKEKRMR PSESTEMMML HDKPNGRNVA SNVSKEKKMD TSSGSNYKKR  240
KREEPDSLSK KEKRVWCNAS DKKIYSGTVQ EKKICGSGKE KNRQAPFTFF KFIYNYFEEF  300
LLIPPAVAPK LEDLTNRDVY LEDSEKRRSK VRLSVVDGSL AFHQGWDIFV SDHLIKLGEF  360
LLFEYTARKR FSVRIFGIDS CERLDFKKDP KRVEQGIGYG PPQDNNNGSL IDRQCKTKGT  420
SPLHSKKKTV ILISDSGISA DNEDTLNITS DADSTHHVTI NTNKDLKRVQ SGVGNLPDGV  480
CRTKCISPPC SEGKTSSEII VTGAAPLMHE NDGRVGHELE KHDLDEDLMR KQGINSIPSD  540
SITAVGKHQN HSKTIVSQNI YRKYAAPGGF RCLEKWTKAI VNSPATLDGT VPIEPENTRK  600
TGSILVDGYG SIGLNAGNEY FCSEDHHTLV LPVFTMPVKE PLSADRVSKF RHVGTDTDHS  660
INEKGGGAAV QIQTQGEQLE PVGSIVISQS NNIPLSANTA VLGEYGALGR NPAGPEGTCA  720
FVESMLTVPV EKPLSPDGIS KCGSSRTEID HNVNGKGTIV QLETNMDQVE LVGSSVCSQS  780
SNVAMHANHV VVHEPEHYFS RQEGRKSANC AMTESLLPMK DKILELDGHS LLKFSLQLCV  840
PDTTRKWLEL PKSLFDTVKQ KRHDRNVIML KDPTNRLWTV LYHENPVFVG LTAGWKHFVA  900
GNNLQTGDLC KLTKEADGDE LVFSVQITKR RL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G220700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952993.10.0B3 domain-containing protein Os02g0598200 isoform X2
TrEMBLK3YPQ30.0K3YPQ3_SETIT; Uncharacterized protein
STRINGSi016245m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-09B3 family protein