PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G227100.1.p

Common Name

SETIT_020045mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 476aa MW: 52300.7 Da PI: 10.9799

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G227100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	93	3.2e-29	221	318	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 ++ r+ws eDei++L +l++++ak+g+ + +d+ ++++++++++ +++s++ql++K+rrLK+K+k ++a++g++p++ ++h+++++e Seita.1G227100.1.p 221 RPPRVWSPEDEITILSALVECRAKKGQlpASIQDTGKVHSQISGQLTANASTTQLSDKVRRLKHKYKLLFTRARNGRDPDLPTQHERDVYE 311 578**********************777888****************************************************** PP DUF573 91 lskkiWg 97 lskk+Wg Seita.1G227100.1.p 312 LSKKVWG 318 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.9E-28	223	318	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
SFRRRRRNSP SPIPSRSPSR SRSRSRSRSK TPPPNLRPNA AALSSTPTSA GADFAAASDS 60 DADAGGGRGR VSSPRRRDRK GAPRDRLDSD ADADASAGGR APSPRRRRKR SPSFHSDSDA 120 DAGGRVPSPR RNRERTPRLH SDSDSDNSAA AAGSEDDGAG AGDASSLPRA RRSSRIETSN 180 IKPVSTRPME APRRAPAGSS QRRSKRRHSS PGRASPEHQK RPPRVWSPED EITILSALVE 240 CRAKKGQLPA SIQDTGKVHS QISGQLTANA STTQLSDKVR RLKHKYKLLF TRARNGRDPD 300 LPTQHERDVY ELSKKVWGFK SGDILGGSHA YEDTGDAESN EEQEIEESDD AMENGWEHHE 360 RPGKKPKAFR FENGNGNALA AVGRASHGNG SGRDDAEKGK QMYPYLWEAV AELSKEHPSG 420 PIFRKAFGVL EKSKAQAMEE KLRKFRMSEI RQQLHRMDLM KETMRMVLDA LEGSY*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

SFRRRRRNSP SPIPSRSPSR SRSRSRSRSK TPPPNLRPNA AALSSTPTSA GADFAAASDS  60
DADAGGGRGR VSSPRRRDRK GAPRDRLDSD ADADASAGGR APSPRRRRKR SPSFHSDSDA  120
DAGGRVPSPR RNRERTPRLH SDSDSDNSAA AAGSEDDGAG AGDASSLPRA RRSSRIETSN  180
IKPVSTRPME APRRAPAGSS QRRSKRRHSS PGRASPEHQK RPPRVWSPED EITILSALVE  240
CRAKKGQLPA SIQDTGKVHS QISGQLTANA STTQLSDKVR RLKHKYKLLF TRARNGRDPD  300
LPTQHERDVY ELSKKVWGFK SGDILGGSHA YEDTGDAESN EEQEIEESDD AMENGWEHHE  360
RPGKKPKAFR FENGNGNALA AVGRASHGNG SGRDDAEKGK QMYPYLWEAV AELSKEHPSG  420
PIFRKAFGVL EKSKAQAMEE KLRKFRMSEI RQQLHRMDLM KETMRMVLDA LEGSY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	27	RSRSRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G227100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700838.1	0.0	STOREKEEPER protein
TrEMBL	K3Z0H9	0.0	K3Z0H9_SETIT; Uncharacterized protein
STRING	Si020045m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	9e-14	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Seita.1G227100.1.p