PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G230500.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 246aa MW: 26948.5 Da PI: 10.751

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G230500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	71.3	3.1e-22	35	148	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec....eaessss 80 aag+kd+h k+ T g+RdRRv ls+++a++f+d qd+L + ++sk+i WL++ ai+el+++ ++++as+ ++++ s Seita.1G230500.1.p 35 AAGGKDQHNKVVTVWGLRDRRVQLSVPTAIQFYDSQDRLNVAQPSKAIKWLIRT---AIDELPSLdcsftlpGTDAASSPpaagDNVEVST 122 6899************************************************86...6888888877799994444433333222222222 PP TCP 81 sasnsssg...................k 89 s+ +++ + Seita.1G230500.1.p 123 SKT--NKSsvlslantparprtvkaptR 148 222..22223444444332322222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-20	37	191	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	19.15	38	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEEIGMECTA YKRPRTALDG GSAAAWRMCQ VARAAAGGKD QHNKVVTVWG LRDRRVQLSV 60 PTAIQFYDSQ DRLNVAQPSK AIKWLIRTAI DELPSLDCSF TLPGTDAASS PPAAGDNVEV 120 STSKTNKSSV LSLANTPARP RTVKAPTREA TRPSGWREWG EPGRPRMSAA KRPDQGGSAA 180 GGRQWREERK RWSERERPVV HTVYGAAHHF RLQPGKDSSS MPPVSIDFVK NLPAEAGRMS 240 FLWTK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-14	43	94	1	55	Putative transcription factor PCF6
5zkt_B	3e-14	43	94	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G230500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955073.1	4e-83	transcription factor PCF8
Swissprot	A2ZMR9	6e-42	PCF8_ORYSI; Transcription factor PCF8
TrEMBL	A0A368PND0	1e-180	A0A368PND0_SETIT; Uncharacterized protein
STRING	Si019114m	1e-142	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11553	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	5e-23	TCP family protein

Link Out ? help Back to Top
Phytozome	Seita.1G230500.1.p