PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G268700.2.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 241aa MW: 26999.4 Da PI: 10.4686

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G268700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.2e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt+eLH++Fv+av+ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR+ Seita.1G268700.2.p 19 PRLRWTSELHRSFVRAVDCLGGQDKATPKLILQLMDVRGLTIAHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-30	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.469	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	3.58E-16	18	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-6	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGGAGGATTR RRYNRSTVPR LRWTSELHRS FVRAVDCLGG QDKATPKLIL QLMDVRGLTI 60 AHVKSHLQMY RSSGHDIRKT EMQPRLGHLK HSFTVDEGGP KEFICPPMKR AKAGAATVTH 120 ESMQGNSDMG APGTRRCGDD YTQAVPVGCS RRITECLRWQ WQRDAAAAST LQELGFWVRG 180 TEPFKVRQVR KEELLKKKYS GKKECYQKKI PLSCLNCFSL ALIFLFTCLA SRLICMPLAL 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	20	73	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	20	73	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	20	73	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	20	73	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G268700.2.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087811	4e-82	BT087811.1 Zea mays full-length cDNA clone ZM_BFb0210E07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679157.1	1e-138	uncharacterized protein LOC101762085 isoform X1
TrEMBL	A0A368PPL4	1e-179	A0A368PPL4_SETIT; Uncharacterized protein
STRING	Si019625m	1e-121	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-28	G2-like family protein

Link Out ? help Back to Top
Phytozome	Seita.1G268700.2.p