PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G286100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 195aa    MW: 22120.6 Da    PI: 7.0583
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G286100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC170.22.5e-53231271102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql+ fw++q   ie++tdfknh+lPlarikki+kad+dv+misae+Pv+++kac +fileltlrsw+h+eenkrrtl+k diaaa+trtdi
  Seita.1G286100.1.p  23 QLREFWTTQmdeIEQTTDFKNHTLPLARIKKIMKADKDVRMISAEVPVVFAKACKVFILELTLRSWMHTEENKRRTLQKYDIAAAITRTDI 113
                         89******988889***************************************************************************** PP

               NF-YC  89 fdflvdivprdelk 102
                         +dflvdi+prde+k
  Seita.1G286100.1.p 114 YDFLVDIIPRDEMK 127
                         ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.52E-3020117IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.8E-3537109IPR009072Histone-fold
PfamPF008083.7E-1945108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGVGSQPYPA AAAYAPLTMH QQQLREFWTT QMDEIEQTTD FKNHTLPLAR IKKIMKADKD  60
VRMISAEVPV VFAKACKVFI LELTLRSWMH TEENKRRTLQ KYDIAAAITR TDIYDFLVDI  120
IPRDEMKEEG LGLPRVGLPA AMGPQLIIVL IHITMCQHSR YDVWWPAGSP NDVYVAEAAR  180
ARGRAPEEQQ QQSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5430123295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G286100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416290.0BT041629.1 Zea mays full-length cDNA clone ZM_BFb0020N05 mRNA, complete cds.
GenBankEU9707120.0EU970712.1 Zea mays clone 349260 nuclear transcription factor Y subunit C-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951763.12e-78nuclear transcription factor Y subunit C-4
RefseqXP_004951764.12e-78nuclear transcription factor Y subunit C-4
RefseqXP_004951765.12e-78nuclear transcription factor Y subunit C-4
RefseqXP_004951766.12e-78nuclear transcription factor Y subunit C-4
SwissprotQ655V55e-67NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A368PR991e-143A0A368PR99_SETIT; Uncharacterized protein
STRINGSi020107m1e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-68nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]