PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G304600.1.p
Common NameLOC101782330, SETIT_019897mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 170aa    MW: 19640 Da    PI: 8.4577
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G304600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.4e-1379138463
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +r rr+++NRe+ArrsR RK++++ eL   v  L + N++L ++l++    ++++  e+
  Seita.1G304600.1.p  79 ERRKRRMISNRESARRSRMRKQKQLSELWSQVVHLRSTNRQLLDQLNHVIRDCDRVLHEN 138
                         689********************************************9999999887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-1076132No hitNo description
SMARTSM003382.3E-1476140IPR004827Basic-leucine zipper domain
PfamPF001701.3E-1078138IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.64578141IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-1280129No hitNo description
CDDcd147022.65E-1681132No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MYPAEIASVP YLSPASAASF KPHYHAATND FLFQYSNLLV PHPSYYQDVA HLVHEASLPV  60
GNKSNSEESD DYQRSLAEER RKRRMISNRE SARRSRMRKQ KQLSELWSQV VHLRSTNRQL  120
LDQLNHVIRD CDRVLHENSQ LRDEQTKLQK QLEKLPVETP ESGVMNPDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179100RRKRRMISNRESARRSRMRKQK
29299RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G304600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953778.11e-122basic leucine zipper 8
TrEMBLK3Z0361e-121K3Z036_SETIT; Uncharacterized protein
STRINGSi019897m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-28basic leucine-zipper 42