PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.1G318500.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 161aa MW: 18212.7 Da PI: 10.1087

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.1G318500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.7	3.5e-26	36	86	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +++e +s++Fs+pi++AA+eL+v++T +K++CR++GI+RWPhRk+k l Seita.1G318500.1.p 36 AKALTFELVSQHFSMPIEQAARELNVGVTGMKKRCRELGIPRWPHRKVKNL 86 589*********************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.768	21	106	IPR003035	RWP-RK domain
Pfam	PF02042	5.7E-22	39	85	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MSSLDTAREK SRKLDCDSVE QATQVQGRPA GGGSEAKALT FELVSQHFSM PIEQAARELN 60 VGVTGMKKRC RELGIPRWPH RKVKNLQTLI DNVQELGKET EEVDGHLTRI VVERLQQTKK 120 LIEERPEVPL DEKTKQLSQA CYKENWKRKR GSRPGQHRAS *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.1G318500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955210.1	1e-115	protein RKD1
Swissprot	Q9M9U9	6e-36	RKD1_ARATH; Protein RKD1
TrEMBL	A0A368PRG9	1e-114	A0A368PRG9_SETIT; Uncharacterized protein
STRING	Si020172m	6e-76	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-38	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Seita.1G318500.1.p