PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G327200.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 246aa    MW: 26405.6 Da    PI: 9.3304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G327200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10128161137
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 
                         +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++
  Seita.1G327200.2.p 128 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQR 161
                         79***************************7...3333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.14E-8126169No hitNo description
SuperFamilySSF474592.91E-9126181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-8126160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.525127180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7128165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MALEAVVFPK EHLACTAKAG VAAHLASLGC GFDIDDLEEK GGVVLQEEAA AAALPLGASA  60
ATAWDAALCP CSVAPGAVEE CWDAQRRLSA SPPPVPVAPG RGKAAASAAR RRRRRPKAVK  120
NTEEMESQRR NHIAVERNRR RQMNEYLAVL RSVMPPSYAQ RVRTSTISMA PAVLSVHRAL  180
RQHRPSCKSF AGHVTMHVHE RLGVHRVVDC RCPPNFYCKG RQILLPPGLA WPSADCCCLA  240
ALGLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114RRRRRR
2129139RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G327200.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945523e-70FP094552.1 Phyllostachys edulis cDNA clone: bphylf024j19, full insert sequence.
GenBankFP0987393e-70FP098739.1 Phyllostachys edulis cDNA clone: bphyst010j12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953984.11e-110transcription factor bHLH94
TrEMBLA0A368PRM71e-176A0A368PRM7_SETIT; Uncharacterized protein
STRINGSi017701m1e-109(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-17bHLH family protein