PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G330800.1.p
Common NameLOC101775988, SETIT_018144mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 257aa    MW: 27213.7 Da    PI: 7.8046
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G330800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20113163155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GVr+++ +g+W+AeIrdp     +   r +lg+f+tae+Aa+a++ a+ +++g
  Seita.1G330800.1.p 113 SKYRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEDAARAYDIAAIEFRG 163
                         89********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-12113163IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-23113173IPR016177DNA-binding domain
CDDcd000183.39E-31113173No hitNo description
SMARTSM003804.2E-37114177IPR001471AP2/ERF domain
PROSITE profilePS5103225.765114171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-31114171IPR001471AP2/ERF domain
PRINTSPR003673.9E-11115126IPR001471AP2/ERF domain
PRINTSPR003673.9E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAKRAGGFHL PNAEQENSLL LRALISVVSG DNAVPALLPE EAEAPVVEAP APCTCTTCGA  60
NGCAAGGCEL LAVTGIGSSS DSDDGGECSA SASRAAITGG VGKLRRRQRG RVSKYRGVRR  120
RPWGKWAAEI RDPHRAVRKW LGTFDTAEDA ARAYDIAAIE FRGRRAKLNF PADVTPAPAP  180
SWAPTSTYHH HLPQPLPESL HETCRSNASS PVQVALVAAA PAGQHGARLV PKERDIWDGL  240
NEIMMMDDGS FWSSMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-201141751476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104120RRRQRGRVSKYRGVRRR
2105121RRQRGRVSKYRGVRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G330800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9538026e-50EU953802.1 Zea mays clone 1446523 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954022.10.0ethylene-responsive transcription factor ERF112
TrEMBLK3YV480.0K3YV48_SETIT; Uncharacterized protein
STRINGSi018144m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-22ethylene response factor 110