PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.1G338100.2.p
Common NameSETIT_019645mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 222aa    MW: 23923 Da    PI: 11.5571
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.1G338100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42e-3252108158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVN+KQy++Il+RRq Rakle+++kl  ++rkpylheSRh hA++R+RgsgGrF
  Seita.1G338100.2.p  52 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VRARKPYLHESRHLHAMKRARGSGGRF 108
                         59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-3850111IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.53551111IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-2853108IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.4E-245476IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.4E-2485108IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MACVSYPYND SGSGGVWAAY GSRASAATVF HPKIAGGGTS ARIPLPLELA ENEPIYVNPK  60
QYHGILRRRQ LRAKLEAQNK LVRARKPYLH ESRHLHAMKR ARGSGGRFLN TKQLQQQQQS  120
HTASTRSTAN GTSSSGSTHL RLGGGTAGNQ AMPTTKAMAS HDNCKKAVAS APAFTVTPML  180
RRDDAFFQHP SHHLSFSGHF GQASAQAGMH KGTQQRVPVM R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-2152113263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.1G338100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954092.11e-163nuclear transcription factor Y subunit A-8 isoform X2
RefseqXP_022681003.11e-164nuclear transcription factor Y subunit A-5 isoform X4
SwissprotQ9LNP62e-39NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A368PS191e-162A0A368PS19_SETIT; Uncharacterized protein
TrEMBLA0A368PUD31e-162A0A368PUD3_SETIT; Uncharacterized protein
STRINGSi019645m1e-162(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.43e-39nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Djami-Tchatchou AT,Ntushelo K
    Expression Profile of Stress-responsive Arabidopsis thaliana miRNAs and their Target Genes in Response to Inoculation with Pectobacterium carotovorum subsp. carotovorum.
    Pak. J. Biol. Sci., 2017. 20(3): p. 147-153
    [PMID:29023006]