PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G021500.1.p
Common NameSETIT_033305mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 410aa    MW: 44352.1 Da    PI: 5.3112
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G021500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.43.3e-20131403127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLp.k.kvka.eekewyfFskrdkkya....tgkrknratksgyWk 84 
                         +GfrF+Pt  e  ++yL + v+g +l+++   v++++d+y +eP dL  + +    ++ + +fF++ + +++    + +r++r++ sg W+
  Seita.2G021500.1.p  13 RGFRFNPTPLEAATYYLPRLVAGAPLHEAVrpVVNHADVYGCEPGDLArQfC-PLpRTGHRFFFTHCKLQQPqragKASRATRVAGSGSWH 102
                         7************************555322259999**********83332.222455789999888777743334568888888***** PP

                 NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                         ++   k+v+++ g +vg  + L +     + ge tdW+m+ey+
  Seita.2G021500.1.p 103 SQSV-KDVVDHAGVKVGEIRKLRYK----KGGEYTDWLMDEYS 140
                         9977.66667699***********8....567899*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-239161IPR003441NAC domain
PROSITE profilePS5100523.73811161IPR003441NAC domain
PfamPF023656.4E-1213140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEMAAPVPVI FSRGFRFNPT PLEAATYYLP RLVAGAPLHE AVRPVVNHAD VYGCEPGDLA  60
RQFCPLPRTG HRFFFTHCKL QQPQRAGKAS RATRVAGSGS WHSQSVKDVV DHAGVKVGEI  120
RKLRYKKGGE YTDWLMDEYS CCLEDAVAGD KQFVLCNIYV SPRADQGSAA RQESAAFFAP  180
PAPAPVVILA QAAAAPKRPA PQSAEPPCPK RMRGAVAPTP PVVQPAGYCT ASFAPPLPYP  240
YVPHIAASAQ PPPPPVPTRL IAPPQSRSPA PTPLQSRSLP KQQAPPPTLS VPSEQRKQST  300
RDPFEAAEQR DEAEEERVAA PVDEDDDWAE LEKCMDDAVP TAEGSTMSED EMDQHLSSLL  360
FEEEEIIPDA IAAPDPASKG SKSALQDDLD LFHKILDDTL RRSSSTMAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G021500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679747.10.0phosphatase and actin regulator 4B-like
RefseqXP_022679748.10.0phosphatase and actin regulator 4B-like
RefseqXP_022679749.10.0phosphatase and actin regulator 4B-like
TrEMBLA0A368PU900.0A0A368PU90_SETIT; Uncharacterized protein
STRINGSi033305m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-13NAC domain containing protein 103