PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G026600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 394aa    MW: 43487.5 Da    PI: 6.0919
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G026600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.5e-141258349
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        i+n+  r++tf kRr+g+ K A  LS+L++a+va+ + s++gk+  +
  Seita.2G026600.1.p 12 IQNNNSRSITFFKRRAGLYKTAADLSTLTGARVAIALESESGKMSSF 58
                        99******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-13161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.072262IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-8424IPR002100Transcription factor, MADS-box
CDDcd002668.64E-17470No hitNo description
SuperFamilySSF554554.84E-16572IPR002100Transcription factor, MADS-box
PfamPF003192.4E-161258IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-82439IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-83960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MTRPRRSGIS YIQNNNSRSI TFFKRRAGLY KTAADLSTLT GARVAIALES ESGKMSSFGT  60
PSAGPIIDSF LSGKAPMDPF VNKEQKSEIT ILQNEVFKVE KEKFMEDKRT KETIARAKEV  120
QETLGKAKLA YGKIEDLSVE ELNELVHDLS QIEQEIDDRL RPQQPSYQLE VGGSRDPFLG  180
RPSSSSSPSS QIQMPPRRLP WTPIQPSLQL PKSSWSLPQS SRSRSSLLNP SMLPSAQAQP  240
ISMPPFQHSQ MPQHALAITF YNEFPPPSSS QQPPTPLPIE AEHYMVEHPE NHASTQDFTA  300
GHPFANHQWP SPIPSNEPYY DISLYGLNLY LGDHGDYGGL VTVERDMAGP SGLHQQTYDC  360
PYRNFLGSSS SGESHGDYGP GNNVGDMAHL GDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G026600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958932.10.0uncharacterized protein LOC101780877
TrEMBLA0A368PUF60.0A0A368PUF6_SETIT; Uncharacterized protein
STRINGSi032862m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-11AGAMOUS-like 62