PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G032900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 443aa    MW: 46418.6 Da    PI: 10.0578
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G032900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP101.61.4e-316520215133
                 TCP  15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssasnsssg... 88 
                         +g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++                             ++++++ +   
  Seita.2G032900.1.p  65 KGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdaaagfpahpasaaA--------------KDQHHRTPpda 141
                         899************************************************777766444333320..............22222222222 PP

                 TCP  89 ...............kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                                        ++ + + +s+ s++s+ s+l+l++ esr kar+rarer++    ++
  Seita.2G032900.1.p 142 dadappdadhhqhqqQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERSAAARDKD 202
                         23334444444444377777779999**************************998776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136922.89857112IPR017887Transcription factor TCP subgroup
PfamPF036348.1E-3365198IPR005333Transcription factor, TCP
PROSITE profilePS513709.992181201IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEAVVAGGGE GRGSKRGRVK AADPGTEPDA KRRAAAPPFS RWRVPVASCE PRAARTATAR  60
STRPKGIRDR RVRLSVATAI QFYDLQDRLG YDQPSKAIEW LIKAAAAAID KLPSLDAAAG  120
FPAHPASAAA KDQHHRTPPD ADADAPPDAD HHQHQQQQLT RSGCSSTSET SKGSVLSLSR  180
SESRVKARER ARERSAAARD KDKDPAADDA ATTGRRAAPT TSSAQAASFT ELLTGMAAAT  240
AAAGSAPADH KQQQSPPWQP MAAPAIADYI GFAQPRKAAG HAIAHSFASP APHLANIAPI  300
AMAPAQHFGL ASGAVTVASG GGEPHAEMTQ FSFLQDHYMP VHAAPASGPA GDYNLNFSMS  360
SGLVGVNSRG TLQSNSQPHI SGHHHQHHQL QRLSTPLDAP NIPFLFSPAA AVTTPATAES  420
QFAAFQLWNG FQHADMKEKG KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2265113755Putative transcription factor PCF6
5zkt_B2e-2265113755Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G032900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1904561e-171EU190456.1 Zea mays RFLP probe php20581 (CBM 2.10) genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679768.10.0LOW QUALITY PROTEIN: transcription factor PCF6
TrEMBLA0A368PVC80.0A0A368PVC8_SETIT; Uncharacterized protein
STRINGSi029871m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-21TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2