PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G037100.3.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 261aa    MW: 27521.9 Da    PI: 10.1284
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G037100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.41.3e-29127183158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         dep+YVNaKQ+++Il+RR +Rak++++ ++ +++rkpylheSRh hAlrR+Rg+gGrF
  Seita.2G037100.3.p 127 DEPVYVNAKQFNGILRRRLARAKAARDLRV-SRNRKPYLHESRHLHALRRARGTGGRF 183
                         79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.7E-33125186IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.274126186IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.5E-28128183IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-21129151IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-21160183IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGFHEHGPLG FQLTTDGGRG HGGGGATAAP WWAAAQGQGC AASKFPISSG DSDPWQDLKY  60
HEPSTAAIAA YPELHKYHAP FDLALGQSMV WSNNADAGQG QSFGLYSPYG AQPMHGRVLL  120
PPAIAADEPV YVNAKQFNGI LRRRLARAKA ARDLRVSRNR KPYLHESRHL HALRRARGTG  180
GRFLSTSSLA AGDQAPPLAS TSLGGPEPTK GSASTPARLQ PGQVRQDVFL SPLINMAGNG  240
DGQARWASAA PRACCDLLKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A5e-18127185261HAPB protein
4g92_A5e-18127185261HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11624GGRGHGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G037100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682174e-79EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
GenBankEU9750234e-79EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955490.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A368PUS00.0A0A368PUS0_SETIT; Uncharacterized protein
STRINGSi032469m1e-151(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.35e-25nuclear factor Y, subunit A10