PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G072200.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

WRKY

Protein Properties

Length: 143aa MW: 16066.3 Da PI: 8.2157

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G072200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.5	9.7e-27	77	129	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 l+Dgy+WrKYGqK++kg+++prsYY+Ct++gC+v+k +d k v++tYe++Hnhe Seita.2G072200.1.p 77 LNDGYRWRKYGQKVIKGNPNPRSYYKCTHPGCSVRK------HDLKSVITTYEEKHNHE 129 58********************************......59999*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.9E-31	63	131	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-25	69	131	IPR003657	WRKY domain
PROSITE profile	PS50811	30.044	72	131	IPR003657	WRKY domain
SMART	SM00774	1.1E-28	77	130	IPR003657	WRKY domain
Pfam	PF03106	1.4E-19	78	129	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MDMPCKARQV KLFCTISIEC EGDEDETESK RRKLDDLVTS TIITVVATST IDIGAAASRA 60 FQEPRVVVQT TSEVDILNDG YRWRKYGQKV IKGNPNPRSY YKCTHPGCSV RKHDLKSVIT 120 TYEEKHNHEV PAARIHSPPL FT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-34	68	132	8	78	Probable WRKY transcription factor 4
2lex_A	9e-34	68	132	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G072200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660121.1	1e-103	probable WRKY transcription factor 2 isoform X1
Refseq	XP_014660122.1	1e-103	probable WRKY transcription factor 2 isoform X1
Swissprot	Q9FG77	3e-41	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A368PWH4	1e-102	A0A368PWH4_SETIT; Uncharacterized protein
STRING	Si031470m	2e-77	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12338	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	4e-44	WRKY DNA-binding protein 2

Link Out ? help Back to Top
Phytozome	Seita.2G072200.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]