PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G079000.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 247aa MW: 27318.1 Da PI: 9.969

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G079000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.7	1.5e-28	98	180	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW+k+ev aLi++r+ +e r+++ lk+plWeev ++m++ g+ rs+k+Cke wen+nk+++k ke+ kkr + + +tcpyfd+ Seita.2G079000.1.p 98 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVTSRMAAAGYGRSAKRCKEMWENINKYFRKAKESGKKR-PAHAKTCPYFDE 180 8******************************************************************98.99999***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.42E-27	97	162	No hit	No description
PROSITE profile	PS50090	6.783	97	155	IPR017877	Myb-like domain
Pfam	PF13837	5.3E-20	97	181	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MVPLPCVARL PVRMGASTIL LRRRQEADKF ARHRASTAAR EAAIINYLEK ISGKTIALPP 60 ASRDDTSMSQ DVAAGKELVP YEGGGGGGDT LHLMSTSRWP KHEVEALIRV RTGLEGRFQE 120 PGLKGPLWEE VTSRMAAAGY GRSAKRCKEM WENINKYFRK AKESGKKRPA HAKTCPYFDE 180 PDCLYSCTAG ATGAGGSNNN AGDKAAKASL ELLDAVVKYP DAQRECRWRR RWRRQTREAE 240 ELQQPD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G079000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT040737	1e-111	BT040737.1 Zea mays full-length cDNA clone ZM_BFc0121H15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012699024.1	1e-147	LOW QUALITY PROTEIN: trihelix transcription factor GT-2-like
TrEMBL	A0A368PYG5	0.0	A0A368PYG5_SETIT; Uncharacterized protein
STRING	Si033157m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6399	35	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-42	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Seita.2G079000.1.p