PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G113100.1.p
Common NameLOC101752652, SETIT_032478mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 102aa    MW: 10618.7 Da    PI: 8.2176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G113100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-052749123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H++ H
  Seita.2G113100.1.p 27 YECSFCKRGFTNAQALGGHMNIH 49
                        99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.9E-62651IPR007087Zinc finger, C2H2
SuperFamilySSF576675.5E-72653No hitNo description
SMARTSM003550.0092749IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3232754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MEGGFNKAGS PEASGEGSRR APAAAYYECS FCKRGFTNAQ ALGGHMNIHR KDRGGKSGAA  60
PPQQDDAGGS RTYGGDVHLG LSLGRKEDVD LELRLGGYPY N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G113100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9479762e-78EU947976.1 Zea mays clone 368057 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959168.11e-68probable transcriptional regulator RABBIT EARS
TrEMBLK4A0T73e-67K4A0T7_SETIT; Uncharacterized protein
STRINGSi032478m6e-68(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.19e-18C2H2 family protein