PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G152300.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 470aa MW: 55649.5 Da PI: 8.934

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G152300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.9	2.8e-12	4	63	32	91
FAR1 32 tfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 ++ C+k+g+ + k e++ r++++ r+gCka +k+k ++ ++ w ++++leHnH+l p Seita.2G152300.1.p 4 ELLCNKQGHWDYYKPG-EERVREKMSMRCGCKAFVKIKWNQkKDYWFFERIRLEHNHPLHP 63 678******99988.999**************999899************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.1E-9	4	63	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.6E-32	184	278	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MVLELLCNKQ GHWDYYKPGE ERVREKMSMR CGCKAFVKIK WNQKKDYWFF ERIRLEHNHP 60 LHPSPTVTQF LRIQKDKDPI VMGIVDQMHR CDVSHNTTVN VLVELYGGRQ NFTFTEMDLR 120 NRKAANARKE RENDIPKLLE FFREMKAHNE YFYYELQVDS ENVIKNVFWS HASQRAEYRD 180 FGDVVTFDTT YKTNMYSMPL AMFVGPNHQL QNVVFGQALL QDEQANTFEW LFGAFKNCMS 240 GGRDPRCILT DQDSSMAAAI KKVFKQTQHR LCRWHMLKKY KAELKKLYKI HDGLKIKLVT 300 LINHPLTPTE FEFAWNELVD EYGIREDDTI QGLWESRKLW VAANFKPLYC GRMTSTQRSE 360 SVNKMIKGSG FTGHMTCMSK FARRMLDFIQ HTNHTAGGET HWSQAGNWWL TLQPFDGHLS 420 RVYTRAVYKK YRETYIYSTA FHIDPHPNEV DVYLVTHTDQ SWQYAWFQH*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MVLELLCNKQ GHWDYYKPGE ERVREKMSMR CGCKAFVKIK WNQKKDYWFF ERIRLEHNHP  60
LHPSPTVTQF LRIQKDKDPI VMGIVDQMHR CDVSHNTTVN VLVELYGGRQ NFTFTEMDLR  120
NRKAANARKE RENDIPKLLE FFREMKAHNE YFYYELQVDS ENVIKNVFWS HASQRAEYRD  180
FGDVVTFDTT YKTNMYSMPL AMFVGPNHQL QNVVFGQALL QDEQANTFEW LFGAFKNCMS  240
GGRDPRCILT DQDSSMAAAI KKVFKQTQHR LCRWHMLKKY KAELKKLYKI HDGLKIKLVT  300
LINHPLTPTE FEFAWNELVD EYGIREDDTI QGLWESRKLW VAANFKPLYC GRMTSTQRSE  360
SVNKMIKGSG FTGHMTCMSK FARRMLDFIQ HTNHTAGGET HWSQAGNWWL TLQPFDGHLS  420
RVYTRAVYKK YRETYIYSTA FHIDPHPNEV DVYLVTHTDQ SWQYAWFQH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G152300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959304.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A368PYX3	0.0	A0A368PYX3_SETIT; Uncharacterized protein
STRING	Pavir.Ib02914.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-55	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.2G152300.1.p