PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G168800.2.p

Common Name

SETIT_030441mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 261aa MW: 27921.8 Da PI: 9.1189

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G168800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.3e-33	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl Seita.2G168800.2.p 41 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.738	38	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-31	38	96	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.97E-16	41	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	41	96	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	43	94	IPR001005	SANT/Myb domain
Pfam	PF14379	9.1E-21	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MFPPGLIHHR PDGPAPGDGA PRSGPGGGPG GPSLVLTADP KPRLRWTADL HERFVDAVAQ 60 LGGPEKATPK TILRTMGVKG LTLFHLKSHL QKYRLGKQSG KEGSEQSKDA SYLLDAQSGM 120 SVSPRVAAQD VKESQEVKEA LRAQMEVQRR LHEQVEVQKR VQIRMEALQK YIDSILESAC 180 KMVTEQFASS GFSISDPDLP EISPGGVMCG PTDTLSSSVF NQLSVSSIDS HSPGGKPSPS 240 GIEGPPMLLQ KSPELKRRSS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	41	97	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G168800.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956514.1	0.0	protein PHR1-LIKE 2 isoform X1
Swissprot	Q94A57	2e-73	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A368Q000	0.0	A0A368Q000_SETIT; Uncharacterized protein
TrEMBL	A0A368Q049	0.0	A0A368Q049_SETIT; Uncharacterized protein
TrEMBL	K3ZV10	0.0	K3ZV10_SETIT; Uncharacterized protein
STRING	Si030441m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-73	G2-like family protein

Link Out ? help Back to Top
Phytozome	Seita.2G168800.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]