PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G200300.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

ZF-HD

Protein Properties

Length: 386aa MW: 41186.9 Da PI: 8.4976

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G200300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	34.8	3.9e-11	1	30	29	57
ZF-HD_dimer 29 mpsegee.gtaaalkCaACgCHRnFHRrev 57 mps++++ +++a+l+CaA gCHRnFHRr + Seita.2G200300.1.p 1 MPSPEADpADPASLRCAAYGCHRNFHRRLP 30 6788888899*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51523	10.056	1	29	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.4E-7	6	29	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MPSPEADPAD PASLRCAAYG CHRNFHRRLP EVPPSPPLLM LPPPFPAQPA PVPQHVMHEA 60 VEDRLSAAFD DDETDESDEG SDFDEDCPLS PLPAPAMGLP GYLQPTPHML LVLSTGALGA 120 SIPAVVPRLP ASLGPMPAPG AASTAARKWF RTNLLPRAGQ ELRRHVLHLR GGNHLHRCGE 180 RWCDRLGGVG YSYSGGIVIP REDQRVVTVD DEVKEVAPVP NGLAGIRRAA PAGVSGIHFR 240 GQISPNPPRT GGEEERGGLG GWSTRRGGAN GIGIFTYLQR MQTLSEWLSG ELIQVRASSS 300 IQAASSSMDA AASCFIDFGG ASLIPTARAL SLSSGRAYPV PQHRSCQVAA VTYLALPHRK 360 PRPPPVRPSP MLTARRHPRD QKFKG*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MPSPEADPAD PASLRCAAYG CHRNFHRRLP EVPPSPPLLM LPPPFPAQPA PVPQHVMHEA  60
VEDRLSAAFD DDETDESDEG SDFDEDCPLS PLPAPAMGLP GYLQPTPHML LVLSTGALGA  120
SIPAVVPRLP ASLGPMPAPG AASTAARKWF RTNLLPRAGQ ELRRHVLHLR GGNHLHRCGE  180
RWCDRLGGVG YSYSGGIVIP REDQRVVTVD DEVKEVAPVP NGLAGIRRAA PAGVSGIHFR  240
GQISPNPPRT GGEEERGGLG GWSTRRGGAN GIGIFTYLQR MQTLSEWLSG ELIQVRASSS  300
IQAASSSMDA AASCFIDFGG ASLIPTARAL SLSSGRAYPV PQHRSCQVAA VTYLALPHRK  360
PRPPPVRPSP MLTARRHPRD QKFKG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G200300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959444.1	2e-73	zinc-finger homeodomain protein 10-like
TrEMBL	A0A368Q318	0.0	A0A368Q318_SETIT; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74

Link Out ? help Back to Top
Phytozome	Seita.2G200300.1.p