PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G224000.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-other
Protein Properties Length: 420aa    MW: 43426.7 Da    PI: 10.2287
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G224000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-08244286244
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 
                         rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV
  Seita.2G224000.2.p 244 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQV 286
                         788899************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-10229287IPR009057Homeodomain-like
SuperFamilySSF466895.13E-8233286IPR009057Homeodomain-like
PfamPF000465.4E-6244286IPR001356Homeobox domain
CDDcd000863.83E-8244286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNPPPRTQLS FSGSRAVRVN WSNPPLSLTG AYAPGRREGG GPWVSSSGRC RYKASLSWRV  60
PTVPLLVPGR MELGLSLGET MADAGRDLVL GLGMGLGVRR DEEAETGREV RREHEFGAGR  120
CGRSSPEPAV RLTLLPGLVP SLGLPWPPSS ETSRHLEAST RGFDVNRAPS LSVAGAAAED  180
EEEQDDAAGA GAGAAAAASS SPNNSAGSFP TDFSAQGQAG TGGGGGGDRA GSRASDEDDG  240
GSARKKLRLS KEQSAFLEES FKEHATLNPK QKLALAKQLN LRPRQVEDEA EADGGGLRVP  300
EALLRDADRG EPAAAEGAGG AARAQDGAPL LHAPPGHHPV HVPLLRARRL QLLRPRRRGA  360
GAGLLLVPLR RWRRHCGGPA GAEALVVRRA VLVTPQPPAG RPAATSAAGA GELVMAPSP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G224000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956965.10.0homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-77HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A368Q3V00.0A0A368Q3V0_SETIT; Uncharacterized protein
STRINGSi030329m1e-144(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-11homeobox from Arabidopsis thaliana