PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G224000.3.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 314aa    MW: 33026.8 Da    PI: 9.6259
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G224000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-17244296254
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+
  Seita.2G224000.3.p 244 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 296
                         788899**********************************************9 PP
2HD-ZIP_I/II82.46.5e-27244297154
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                         +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRAR 
  Seita.2G224000.3.p 244 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARC 297
                         69***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-18229294IPR009057Homeodomain-like
SuperFamilySSF466891.41E-17233299IPR009057Homeodomain-like
PROSITE profilePS5007116.811240300IPR001356Homeobox domain
SMARTSM003893.5E-17242304IPR001356Homeobox domain
PfamPF000466.5E-15244296IPR001356Homeobox domain
CDDcd000868.43E-17244301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNPPPRTQLS FSGSRAVRVN WSNPPLSLTG AYAPGRREGG GPWVSSSGRC RYKASLSWRV  60
PTVPLLVPGR MELGLSLGET MADAGRDLVL GLGMGLGVRR DEEAETGREV RREHEFGAGR  120
CGRSSPEPAV RLTLLPGLVP SLGLPWPPSS ETSRHLEAST RGFDVNRAPS LSVAGAAAED  180
EEEQDDAAGA GAGAAAAASS SPNNSAGSFP TDFSAQGQAG TGGGGGGDRA GSRASDEDDG  240
GSARKKLRLS KEQSAFLEES FKEHATLNPK QKLALAKQLN LRPRQVEVWF QNRRARCARE  300
HAAPRHAIYG VLL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G224000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956965.10.0homeobox-leucine zipper protein HOX11
SwissprotQ67UE22e-87HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A368Q1Z70.0A0A368Q1Z7_SETIT; Uncharacterized protein
STRINGSi030329m1e-155(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-18homeobox from Arabidopsis thaliana