PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G253800.1.p
Common NameSETIT_029606mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 500aa    MW: 55387.4 Da    PI: 7.3172
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G253800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.6e-11197234741
                         HHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
              bZIP_1   7 errkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                          rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  Seita.2G253800.1.p 197 LRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 234
                         69***********************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-4189256IPR004827Basic-leucine zipper domain
PfamPF001704.1E-8197234IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.59E-7197237No hitNo description
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-7198234No hitNo description
PfamPF141448.8E-29291365IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MASGGGSMRE QQQEMNISFG MMSHHGHHHH QPPSSSSSSS MHAAAASFMS GKEASGAYDH  60
LGELDQALFM YLDHGSSHGG ATHQEQRQTL NIFPSQPMHV EPSPKGEISL VLSPAPVGSK  120
QPRSPQDHHH HQQAAMEELA GSRRLQQEHH HLQHQPFAAA GAEPAAPGMI KDVKPLAKKD  180
HRRGASTAER DPKVMTLRRL AQNREAARKS RLRKKAYIQQ LESSRIRLAQ LEQELHTARA  240
QGVFFPNSGL LADQGVAGKG VPIGGIDGLS SEAAMFDVEY GRWQEEHYRL MYELRAALQQ  300
HLPEGELQMY VESCLAHHDE MVGIKESAIK GDVFHLISGV WRSPAERCFL WLGGFRPSEV  360
IKMLLSHVEP LTEQQIVGVY GLQQSALETE EALSQGLDAL YQSLSDTVVS DALSCPSNVA  420
NYMGQMAAAM NKLSTLEGFV RQAENLRQQT LHRLHQILTT RQMARSLLAV SDYFHRLRTL  480
SSLWVTRPRA TQEQQQGHS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G253800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669280.0EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660126.20.0transcription factor TGA2
SwissprotQ52MZ21e-170TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A368Q2H60.0A0A368Q2H6_SETIT; Uncharacterized protein
STRINGSi029606m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-145bZIP family protein