PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G280700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 233aa    MW: 24112.9 Da    PI: 10.8556
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G280700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-202474256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a+++l+ge
  Seita.2G280700.1.p 24 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 74
                        589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-142474IPR001471AP2/ERF domain
SMARTSM003807.3E-332487IPR001471AP2/ERF domain
CDDcd000182.10E-272481No hitNo description
PROSITE profilePS5103220.4152481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-272481IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-192581IPR016177DNA-binding domain
PRINTSPR003673.2E-82536IPR001471AP2/ERF domain
PRINTSPR003673.2E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAAQQESGGR AATATAAPAC RGRRFVGVRQ RPSGRWVAEI KDSAQRVRLW LGTFDTAEEA  60
ARAYDEAARA LRGESTRTNF AGRARHCGGG GGAARARLSK NLQHVMARAA AAGRATACAG  120
VGEQFALAAV FRRCQQPAPA APAPPQTPQQ AEAARAAKHA VHPSFVVPRR TEAAPPPSSS  180
ALGAGDPWGA DAAAELLRVE ERSFNVSSSV IVPPSFSASS SESLDVEDFL AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-15680271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G280700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959617.11e-162ethylene-responsive transcription factor RAP2-10-like
TrEMBLA0A368Q3Y01e-160A0A368Q3Y0_SETIT; Uncharacterized protein
STRINGSi032213m1e-101(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-16related to AP2 11