PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G313900.1.p

Common Name

SETIT_032571mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 233aa MW: 26900.8 Da PI: 8.6627

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G313900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.6	2e-18	12	99	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+++ GF+vrk++++k++ +g+i + +fvC ++g+r ++k++ + + ++ae rt+C+ +++ +++ ++ +vt+l+leH H+l Seita.2G313900.1.p 12 FWVSYGRQKGFEVRKRYTNKRQSDGKIASCKFVCANKGYRLKDKRD-HLIKCPQAEIRTDCQVHINFIMNRkKEILKVTDLVLEHDHQL 99 9****************************************999.999***********987777699************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-14	12	99	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MEFRNSGEGW AFWVSYGRQK GFEVRKRYTN KRQSDGKIAS CKFVCANKGY RLKDKRDHLI 60 KCPQAEIRTD CQVHINFIMN RKKEILKVTD LVLEHDHQLH LPETLHLMVS QRKISDLQAF 120 EIEIADDMGI GPKAAHELAS HQVGGPLYFS YTLRDYKNYL RFKRPQEMAY KPCYHSVHYF 180 LKPSNFDKEG GEEAGRGEAQ AQAQAPVVDG TDYKDYMGEL SFTQMLMVIL LV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G313900.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314647.1	1e-90	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	K4A129	1e-175	K4A129_SETIT; Uncharacterized protein
STRING	Si032571m	1e-176	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-18	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.2G313900.1.p