PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G346400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 474aa    MW: 50866.6 Da    PI: 5.6088
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G346400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.61.2e-102512532127
                 NAM  32 evikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgk....rknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                         +++++vd++++ P+dL + ++   ++  wyf++ ++ k+++g+    r++  a+++  W++    k+v+   ++  g+   L + +++ ++
  Seita.2G346400.1.p  25 HFVHHVDVCSAAPEDLVADMEPapGTGVWYFYCVKKYKSTHGRpgghRQRAiAASDTCWHSEAGAKDVKG--SQGGGTVCNLSYGRKDGRS 113
                         5699************854443335669********9999644444266556677999**********87..66689999******999** PP

                 NAM 116 gektdWvmheyr 127
                          ++  W+m ey 
  Seita.2G346400.1.p 114 FTRLGWCMMEYD 125
                         ***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.6891141IPR003441NAC domain
SuperFamilySSF1019414.32E-1520141IPR003441NAC domain
PfamPF023652.2E-445124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAAEDTGDDA SIALLHRLRS GATVHFVHHV DVCSAAPEDL VADMEPAPGT GVWYFYCVKK  60
YKSTHGRPGG HRQRAIAASD TCWHSEAGAK DVKGSQGGGT VCNLSYGRKD GRSFTRLGWC  120
MMEYDDATGG GDHVLCKIYR SPRAQGKPSS ATSKTSSGSK RKAGGEHTEA RPAKLLHEQD  180
TFFTNDYAMP STVAQVNVGG GEEQHLSTQD GEFVETSYGL LPSDVAQVNV EEWIRGMEMF  240
GGEEEQQISK PEQDDGFVKV PPLMTEDITV EDYLLAPETT SGEASGMPAT FTPPDADLLD  300
VLERDSEFRV LQEQQTLQMQ PAHAAEPDPM AEFAGSLQTP PNNTSRAARR MFPGTAGVPA  360
RRAACRMSPQ RREYSARWLL RGNRPGLYVV VGADHLDVAS ASERLRDAHQ IEDAAVAGRG  420
LTAPGEKEAA AATMFWLRRR GTEATNACGA GALRRGTMCS GGGILATTRA DGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G346400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368Q6E20.0A0A368Q6E2_SETIT; Uncharacterized protein
STRINGSi039285m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632