PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G399900.1.p
Common NameSETIT_029124mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 704aa    MW: 77167.8 Da    PI: 4.681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G399900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-103579348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +W++e  + l   ++++G+++W+ Ia+ +   +t+ qc+ rw++yl
  Seita.2G399900.1.p 35 SWSAEVCLVLRAQIALHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 79
                        5888888999999****************9.**************7 PP
2Myb_DNA-binding41.62.8e-1385128146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g W+ eEd ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
  Seita.2G399900.1.p  85 KGGWSREEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 128
                         688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8992879IPR017930Myb domain
SMARTSM007174.8E-83281IPR001005SANT/Myb domain
CDDcd001671.58E-93579No hitNo description
PfamPF002495.1E-93579IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-153686IPR009057Homeodomain-like
SuperFamilySSF466891.95E-2459136IPR009057Homeodomain-like
PROSITE profilePS5129420.10480134IPR017930Myb domain
SMARTSM007174.7E-1484132IPR001005SANT/Myb domain
PfamPF002491.3E-1185128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-1987133IPR009057Homeodomain-like
CDDcd001674.45E-1088129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MATGPDLSSS SGAAAAAVPD AAPGAAAKKD RHIVSWSAEV CLVLRAQIAL HGTDNWTIIA  60
AQFKDKTARQ CRRRWYNYLN SECKKGGWSR EEDMLLCEAQ KLLGNRWTEI AKVVSGRTDN  120
AVKNRFSTLC KRRAKDDEPF QENGTPCSNT NAKRVLTQTG CVTPGAASSS APMKQMRSCS  180
SDLKENIVPN MRLFGQEKGT HQDARQPLAT LSSNNQQNVN TVKSHNLVTT TTKPLLGPEQ  240
HCVKQEGNFM NKDDPKVAIL LQQADLLCSL ATKIKTDDTS QSMDEAWQQL QHHLVKKDDN  300
GMSENSESGI ASLLEELDDL IVDPYESKEE DEQKIREQNG QRQTDVENEH CTGPSQASME  360
VTSNMVPDEM MEDHTVDNCK EVSNLCRNML SRSMEACPDA KIPASENLSE VAEDSRLQRV  420
ESTSPGLTDF DDFIIDPYEN TEEDEQNIRE QNGQIDAHNN QSYGHSQATM ELTPGMAPDE  480
LMEACPADSC KEDNSLCRNV LSGSMEPCPG EEKAASTNSS EVAEESRLQC IESTSPVLAN  540
FQTKECGETP APEKPNEVVE DSRLQCVEFT SPSHTVLRAK AGAETFASPR IPVVAKDSKL  600
PSMEFTSPAH TVLRTKAGAE TFASPRSTVV AKDSKLPSME FTSPAHTVAT FQPYADYADD  660
MPTPKFTASE RNFLLSVIEL TSPGSRPETS QQPSCKRALL NSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-265113325107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G399900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958398.10.0transcription factor MYB88 isoform X1
TrEMBLA0A368Q7X70.0A0A368Q7X7_SETIT; Uncharacterized protein
STRINGSi029124m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.21e-83MYB family protein