PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G411200.1.p
Common NameSETIT_029351mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 572aa    MW: 60447.1 Da    PI: 6.1581
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G411200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.96.2e-15116178163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e e kr  r+ +NRe+A  sRqRKk+++eeLe kvk+++a   +L  +++ ++ e a+lk+++
  Seita.2G411200.1.p 116 EDEAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLSTRISCITAENAALKQQL 178
                         5789********************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-14116180IPR004827Basic-leucine zipper domain
PfamPF001702.6E-13116178IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.254118178IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.31E-13120178No hitNo description
Gene3DG3DSA:1.20.5.1708.8E-17120178No hitNo description
CDDcd147046.53E-21121172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAEPTLHAPA APDPFADLPF PEFQAPVDGD DFAFEDFDLE DLDLDVDFDL DLFASDGQLS  60
QPPPLATSSS SAGSPEGGSS SSGGGGDGGV RNEESSESSS RSASGTDGIG KGKGEEDEAK  120
RRARLVRNRE SAHLSRQRKK QYVEELEGKV KAMQATIADL STRISCITAE NAALKQQLGG  180
AAGAAPPPPM PMYPAVYPLP MPWMHPAYAI RGSQVPLVPI PRLKPQQPAP AAAEPPSKKA  240
RKTKKVASVS LLGLLCLVML CGCLIPAVNR MNGSVDAGEG AGFGPSHHGR VLAVEGPRDS  300
VSDSIDPKPP QASSETLPAL LYLPKNGKHV KINGNLVIKS IVASEKASSR MSGYDGKSPR  360
NQGKEETSLA IPGYVAPLEA GEVMESTTGM KNKLMALAPT DGNMYREDDG LLPQWFSEAM  420
SGPLLSSGMC TEVFQFDVSP SSAHANGIVP VYSNAMSNSS QNFTENLPSR PHTVKNRRIS  480
YSEAIPLRGS KSNDTDHLKT TPKNESFGST KPVSSVVVSV LADPREAGDG NGEGRISSKS  540
LSRIFVVVLI DSVKYVTYSC VLPFKSHSPH L*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G411200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305|PubMed:22050533}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9739380.0EU973938.1 Zea mays clone 424664 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660217.10.0bZIP transcription factor 60
SwissprotQ8LIB30.0BZP60_ORYSJ; bZIP transcription factor 60
TrEMBLK3ZRX10.0K3ZRX1_SETIT; Uncharacterized protein
STRINGSi029351m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111793035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.13e-67bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Oono Y, et al.
    Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide.
    Plant Biotechnol. J., 2010. 8(6): p. 691-718
    [PMID:20331531]
  3. Hu J, et al.
    The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding.
    Plant Physiol., 2011. 156(2): p. 856-72
    [PMID:21487048]
  4. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  5. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  6. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]