PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G423300.1.p
Common NameLOC101785600, SETIT_030140mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 386aa    MW: 40491.2 Da    PI: 6.4993
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G423300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49e-061453437
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                        + C+ +   ++  +C+ ++  lC  C  + H g       H
  Seita.2G423300.1.p 14 PACDFCAGLPAVVYCRADSARLCLPCDRYVH-GantvstrH 53
                        78***************************99.434555555 PP
2CCT63.46.8e-22341382344
                 CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+++ 
  Seita.2G423300.1.p 341 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFARSG 382
                         5689***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.5E-101158IPR000315B-box-type zinc finger
PROSITE profilePS501199.6131158IPR000315B-box-type zinc finger
CDDcd000218.72E-61458No hitNo description
PROSITE profilePS5101714.991339381IPR010402CCT domain
PfamPF062034.5E-16341381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSVAGAGGEE TPLPACDFCA GLPAVVYCRA DSARLCLPCD RYVHGANTVS TRHARAPLCA  60
ACRSAAAAFR RSAAGCGGGC LCADCDFEEG HRRDGDPPPL HDRRAVEVYA GCPSIAELAA  120
VLGVGGRKKA TTVAGDGNGV GWWPDWEELQ VLRLEDVIVP TTSCHGLQPL LAPSSAPKHR  180
SSGGKLAEEV IRQLGELAKS EAAAEAAEAE QFPSWASSEY GIGDGDFEVF HNKAASMSVP  240
SCEQEAWMTT DDSNGACGMA HDAAHDQAPA AASSPAEPSL SSFVAMSEIC PSMAIGNSVG  300
DVVDNGSSKR DAAEATAPRQ HAAPAPAKKA GYDVAYPDRG TVISRYKEKR KNRRFDKQIR  360
YESRKARADG RLRIKGRFAR SGEAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G423300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958615.10.0zinc finger protein CONSTANS-LIKE 13 isoform X1
TrEMBLA0A368Q8T60.0A0A368Q8T6_SETIT; Uncharacterized protein
STRINGSi030140m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-24B-box type zinc finger protein with CCT domain