PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.2G439900.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 254aa MW: 27775.4 Da PI: 9.6848

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.2G439900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.5	2.1e-16	176	222	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +r++r++kNRe+A rsR+RK+a++ eLe+k++ Le+eN++L+ +l++l Seita.2G439900.1.p 176 RRQKRMIKNRESAARSRARKQAYTNELENKIALLEQENERLR-KLKML 222 79****************************************.67666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.5E-14	170	218	No hit	No description
SMART	SM00338	6.5E-9	172	251	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.277	174	218	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.06E-21	176	220	No hit	No description
SuperFamily	SSF57959	7.5E-11	176	218	No hit	No description
Pfam	PF00170	1.9E-13	176	218	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	179	194	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MGVQTMSSHG DDGRRGLSRQ GSVYSLTLTE VETHLGEPLR SMNLDELLRT VLPAAPAAEP 60 SAAAAKKTVD EVWRDIQSAS GARQPTMDEM TLEDFLSRAG VAVDAGGGGC AGPHWLHQYP 120 PQQQYLVPRP LPLGAGDAVY RDGVGVGVFL SQVAGRKRGA AAAVTGDGVV ERTVERRQKR 180 MIKNRESAAR SRARKQAYTN ELENKIALLE QENERLRKLK MLEPLEPPPE HERRPVPQPE 240 VKQQLRRTNS ATF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	178	RKRGAAAAVTGDGVVERTVERRQK

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.2G439900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033247	3e-73	BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds.
GenBank	BT055475	3e-73	BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds.
GenBank	KJ728208	3e-73	KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012699293.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9C5Q2	9e-56	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A368QA87	0.0	A0A368QA87_SETIT; Uncharacterized protein
STRING	Pavir.Ba00263.1.p	1e-114	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4441	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	3e-37	bZIP family protein

Link Out ? help Back to Top
Phytozome	Seita.2G439900.1.p

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]