PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G439900.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 249aa    MW: 26934.4 Da    PI: 11.1364
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G439900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.75.1e-08176196525
                         CHHHCHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKk 25 
                         +r++r++kNRe+A rsR+RK+
  Seita.2G439900.2.p 176 RRQKRMIKNRESAARSRARKQ 196
                         79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-6170196No hitNo description
PROSITE patternPS000360179194IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGVQTMSSHG DDGRRGLSRQ GSVYSLTLTE VETHLGEPLR SMNLDELLRT VLPAAPAAEP  60
SAAAAKKTVD EVWRDIQSAS GARQPTMDEM TLEDFLSRAG VAVDAGGGGC AGPHWLHQYP  120
PQQQYLVPRP LPLGAGDAVY RDGVGVGVFL SQVAGRKRGA AAAVTGDGVV ERTVERRQKR  180
MIKNRESAAR SRARKQVCLP HACRRTPTSS RTRSPYLSRR TSVSGSSRCW SRWSRHRSMS  240
GGQCPSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155178RKRGAAAAVTGDGVVERTVERRQK
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G439900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332473e-73BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds.
GenBankBT0554753e-73BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds.
GenBankKJ7282083e-73KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699293.11e-139ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9C5Q22e-38AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A368Q9K41e-179A0A368Q9K4_SETIT; Uncharacterized protein
STRINGPavir.Ba00263.1.p6e-89(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-28bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]