PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G016300.1.p
Common NameLOC101778107, SETIT_025187mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 433aa    MW: 46977.4 Da    PI: 7.0253
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G016300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66e-15300395395
                         EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk +gL+++D++v++  +
  Seita.3G016300.1.p 300 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPAVWKFKYRYwpNNKSRMYILE-TTGEFVKRHGLQAKDILVIY--K 385
                         789******************999886432..34556777775555*********888888888888.9*******************..4 PP

                         S.SEE..EEE CS
                  B3  87 r.sefelvvk 95 
                         + +++++v +
  Seita.3G016300.1.p 386 NkKSGRYVAR 395
                         4477777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.44E-17296394IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-23296406IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.501298400IPR003340B3 DNA binding domain
SMARTSM010194.4E-9298400IPR003340B3 DNA binding domain
PfamPF023627.6E-12300395IPR003340B3 DNA binding domain
CDDcd100176.76E-18302393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MANAKGSSAG GTGGAGHGGD LGRAISHEQY QAFLASVHRA AAPGAANVHH HQYPAGLIQS  60
PPMAMPAHHV PVPRPQIAVP PPQPFARPPE HSGQSQPPTG HYQDYSPYGN TASSQYTRGF  120
ADWGTHNNAL MSLAHATTFG SGSNSIISNG IHQNFTSYNT HTWTATYMPR NPYNNAYGPA  180
TMNMMLQTPS FHSNSHGKDS GAGFAASSFT VSPTVVPTSP FQLMSPKSPN YTSTQIFEET  240
NNLEDTSTVF GSGDMESDNS EEPDPTPVAE IKDQNQGNGH IVNAMSKTVN CQDYRIILRK  300
DLTNSDVGNI GRIVLPKKDA EPNLPILEDK DGLILEMDDF ELPAVWKFKY RYWPNNKSRM  360
YILETTGEFV KRHGLQAKDI LVIYKNKKSG RYVARAVKAE DIQVPECECI KAGNLSEECG  420
FAVSPSAKKV IM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-342883943109B3 domain-containing transcription factor LEC2
6j9c_D3e-342883943109B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G016300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963379.10.0putative B3 domain-containing protein Os04g0676650
TrEMBLK3ZF380.0K3ZF38_SETIT; Uncharacterized protein
STRINGSi025187m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-36B3 family protein