PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G044400.1.p
Common NameLOC101767413, SETIT_022364mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 379aa    MW: 42921.8 Da    PI: 8.5619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G044400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.85e-0779101123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cg+sF+ + +Lk+H+++H
  Seita.3G044400.1.p  79 HDCKECGMSFKKPAHLKQHMQSH 101
                         56*******************99 PP
2zf-C2H219.33.1e-06107131123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + C+   C+ s+srk++L+rH+ tH
  Seita.3G044400.1.p 107 FACHidGCPLSYSRKDHLNRHLLTH 131
                         78*********************99 PP
3zf-C2H214.69.4e-05136161123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         ++Cp   C++ F+ k n++rH +  H
  Seita.3G044400.1.p 136 FVCPieGCDRKFNIKGNMQRHVQEmH 161
                         89*******************99877 PP
4zf-C2H220.81.1e-06173197123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp  +Cgk+F+  s Lk+H  +H
  Seita.3G044400.1.p 173 FICPevNCGKTFKYASKLKKHEESH 197
                         78*******************9988 PP
5zf-C2H216.13.1e-05264288223
                         EET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                         kC+  dC+ sFs ksnL++H +  H
  Seita.3G044400.1.p 264 KCHfeDCKCSFSKKSNLNKHVKAvH 288
                         7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003558.63254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.29579106IPR007087Zinc finger, C2H2
SMARTSM003550.002479101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-57997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.98E-1192133No hitNo description
Gene3DG3DSA:3.30.160.605.6E-1498133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0043107131IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328107136IPR007087Zinc finger, C2H2
PROSITE patternPS000280109131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-7117167No hitNo description
Gene3DG3DSA:3.30.160.605.2E-8134162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.9E-4136161IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533136166IPR007087Zinc finger, C2H2
PROSITE patternPS000280138161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-7169197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.38E-5170199No hitNo description
SMARTSM003550.0032173197IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.281173197IPR007087Zinc finger, C2H2
PROSITE patternPS000280175197IPR007087Zinc finger, C2H2
SMARTSM003556.5205230IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280207230IPR007087Zinc finger, C2H2
SMARTSM0035515233254IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.98E-6244305No hitNo description
SMARTSM003550.055263288IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009263293IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-4264287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280265288IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4288306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.7294320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.746294323IPR007087Zinc finger, C2H2
PROSITE patternPS000280296320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGDGEHRVGE GEEAGGGAGA ATAAPMRDIR RYRCEFCGVV RSKKSLIRAH VLQHHKDEVG  60
DLEDYQEGGG GASRKEVTHD CKECGMSFKK PAHLKQHMQS HSLERPFACH IDGCPLSYSR  120
KDHLNRHLLT HQGKLFVCPI EGCDRKFNIK GNMQRHVQEM HKDGSPCESK KEFICPEVNC  180
GKTFKYASKL KKHEESHVEL DYTEVICCEP GCMKTFTNVE CLKAHNQSCH QHVQCDVCGT  240
KQLKRNFKRH RQMHEGSCVT ERVKCHFEDC KCSFSKKSNL NKHVKAVHEQ RRPFVCQFSG  300
CGKKFCYKHV RDNHEKSSAH VHTEGDFVEA DEQRPRSAGG RKRKPVSVET LMRKRVAAPD  360
DAPAHVDGTE HLRWLLSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A6e-188322719157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D6e-188322719157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G044400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960333.10.0transcription factor IIIA
SwissprotQ84MZ41e-118TF3A_ARATH; Transcription factor IIIA
TrEMBLK3Z7440.0K3Z744_SETIT; Uncharacterized protein
STRINGSi022364m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-119transcription factor IIIA