PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G051800.1.p
Common NameSETIT_022474mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 360aa    MW: 38597.7 Da    PI: 4.9109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G051800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-184289148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd+llv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Seita.3G051800.1.p 42 RGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 89
                        89********************************************97 PP
2Myb_DNA-binding52.71e-1695138146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Seita.3G051800.1.p  95 RGNITAEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 138
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.213789IPR017930Myb domain
SuperFamilySSF466895.99E-3140136IPR009057Homeodomain-like
SMARTSM007171.1E-154191IPR001005SANT/Myb domain
PfamPF002497.1E-174289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-234396IPR009057Homeodomain-like
CDDcd001673.21E-124489No hitNo description
PROSITE profilePS5129423.79390144IPR017930Myb domain
SMARTSM007173.3E-1594142IPR001005SANT/Myb domain
PfamPF002492.3E-1595138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2397143IPR009057Homeodomain-like
CDDcd001675.12E-1299138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDMDMGMCGL DELEVLAMSP GGSAASAAAA PVASEDEGDL RRGPWTVEED LLLVNYIAAH  60
GEGRWNSLAR SAGLKRTGKS CRLRWLNYLR PDVRRGNITA EEQLLILELH SRWGNRWSKI  120
AQHLPGRTDN EIKNYWRTRV QKHAKQLRCD VNSRQFRDVV RHVWMPRLVE RIQAEYSGGS  180
AVVAQAPAAP AALVAPATTT ASAPAAYYHP SPYGGHGQSA DGVVPPSKAH GGGYYHADYY  240
SYSEPGQEPA PAAMSPDDTS SALRSSLTDA TSHGTQHHYA ASAATPTNEG CCGAAGPTAA  300
GGDDVVQEEE EDVFAGTWSE LLAAAGSDGG SKIGLPDFEF ADFEDNLWSL EDLCLQQLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26391421103MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-26401422103C-Myb DNA-Binding Domain
1msf_C2e-26401422103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G051800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794341e-140HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700181.10.0transcription factor MYB2
TrEMBLA0A368QBM10.0A0A368QBM1_SETIT; Uncharacterized protein
STRINGSi022474m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-83myb domain protein 112