PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G062700.1.p
Common NameLOC101764019, SETIT_023353mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 189aa    MW: 20121.1 Da    PI: 7.2622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G062700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000824466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  Seita.3G062700.1.p 44 FVCKTCNRAFPSFQALGGHRASH 66
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-842107No hitNo description
PfamPF139123.0E-124368IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8064471IPR007087Zinc finger, C2H2
SMARTSM003550.234466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
SMARTSM003554.885107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.64285115IPR007087Zinc finger, C2H2
PfamPF139121.9E-885109IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MKRFAVQESE MARVLMLMSH GQEPALPLLP VAAGRGDRAP ERVFVCKTCN RAFPSFQALG  60
GHRASHKKPR LDGDGDPSLA KPKLHGCSIC GLEFAIGQAL GGHMRRHRAM TGGMPPAATT  120
TIVVDKKPDV AIIHDDDGVK RGLWLDLNHP PCDDGCDAEA ECGHNAAAGI TFHQFLDTGT  180
MAVDCLGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G062700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960500.11e-137zinc finger protein ZAT12
TrEMBLK3Z9Y21e-136K3Z9Y2_SETIT; Uncharacterized protein
STRINGSi023353m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-27C2H2 family protein