PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G082600.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 259aa    MW: 29574.7 Da    PI: 7.0771
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G082600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.46.9e-19111174259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT...EEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk...vveitYegeHnhe 59 
                          Dg++WrKYGqK++++s++ rsYYrCt++   +C+++k v++++++++   + +++Y  +H+++
  Seita.3G082600.1.p 111 YDGHQWRKYGQKNITNSKHQRSYYRCTYKheqNCMATKTVQQQEHNTTetvMYTVVYYAHHTCK 174
                         59**************************9999********998766542227899******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.15E-20104174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-21105174IPR003657WRKY domain
SMARTSM007741.6E-28110175IPR003657WRKY domain
PROSITE profilePS5081114.837112173IPR003657WRKY domain
PfamPF031067.8E-22112174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MHHCTYLALP AINEIEKVQA LVAQLRAIIL PEYEMIPDLR LELVSQLFGS LQDCASKAIL  60
ELQLLTTHPN MNVLCSNSIN KRERIYFMHT NIYQSWRYGE STSYMTPVPH YDGHQWRKYG  120
QKNITNSKHQ RSYYRCTYKH EQNCMATKTV QQQEHNTTET VMYTVVYYAH HTCKANTGPA  180
LPHVIETSTP QSAMSPDRII ASQETVSPHT GSHKILENGH ATQQLTEDMQ VLLKKIACAP  240
LDSDIWEMDA ILCHINAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-131121741069OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G082600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805693.11e-122probable WRKY transcription factor 63
TrEMBLA0A368QCM80.0A0A368QCM8_SETIT; Uncharacterized protein
STRINGSi025181m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.14e-15WRKY DNA-binding protein 38