PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G097900.1.p

Common Name

LOC101774279, SETIT_024510mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

DBB

Protein Properties

Length: 219aa MW: 22287.9 Da PI: 5.8065

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G097900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+ +++ e+ C ++ lC+ C ++ H+ H++v Seita.3G097900.1.p 4 VCDACGRAEAAVLCCADEAALCRRCDVAVHSAnrlagrHSRVA 46 8*****************************6577888888775 PP
2	zf-B_box	23.6	1.1e-07	70	106	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...H 37 + C+ ++ek +fC +++ llC+ C ++ H H Seita.3G097900.1.p 70 PACDICQEKTGYFFCLEDRALLCRPCDVAVHTAggaH 106 67****************************9546673 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.125	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.6E-6	3	46	IPR000315	B-box-type zinc finger
CDD	cd00021	4.96E-6	3	47	No hit	No description
SMART	SM00336	6.5E-9	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.072	67	115	IPR000315	B-box-type zinc finger
SMART	SM00336	2.4E-9	67	115	IPR000315	B-box-type zinc finger
CDD	cd00021	1.76E-7	70	115	No hit	No description
Pfam	PF00643	6.9E-6	70	106	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MKIVCDACGR AEAAVLCCAD EAALCRRCDV AVHSANRLAG RHSRVALLPS TTTTGPSPDL 60 AVDGTGSHHP ACDICQEKTG YFFCLEDRAL LCRPCDVAVH TAGGAHVASH RRFLITGVRI 120 GGGVECHNVP GVDAAAGVVS PSTSSGNGSS SAPSGGNPWS MPDKERRPSS SVGAEAAREG 180 LGDQQWPWSE FLADDAGLGM ELCCPAGLSE PGSSSLTG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G097900.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960780.2	1e-156	B-box zinc finger protein 20
Swissprot	Q9SYM2	1e-39	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	K3ZD76	1e-155	K3ZD76_SETIT; Uncharacterized protein
STRING	Si024510m	1e-155	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12151	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10240.1	4e-35	DBB family protein

Link Out ? help Back to Top
Phytozome	Seita.3G097900.1.p
Entrez Gene	101774279