PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G133100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 259aa    MW: 29162.5 Da    PI: 6.19
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G133100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.22.1e-25211672128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknratk....sgyWkat 86 
                         ppG++F Pt++el+  yL+ k+eg++ +l  v++ev i++++P +L +++k+ +e++wyfF+ r+ ++++ ++++nr+++    +++Wkat
  Seita.3G133100.1.p  21 PPGYHFVPTEQELL-SYLRSKIEGQEQPL-AVVNEVAILDWQPGSLVEAYKGyGENKWYFFTVREPSSSNkEEEPNRKVRvpgvKATWKAT 109
                         9*************.9**********999.89**************8544443888*******999888636678887666667899**** PP

                 NAM  87 gkdkevlskkgel..................vglkktLvfykgrapkgektdWvmheyrl 128
                         g+  ++ +++ ++                  vg+k++L++ + +a++    +W mhey l
  Seita.3G133100.1.p 110 GSVAPIAAARAKQqddggkpaeeeeeeekviVGTKRVLIYQSSDAEE--DGKWSMHEYIL 167
                         *******984444456777777888888888*********9777766..89*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-2412184IPR003441NAC domain
PROSITE profilePS5100526.1520184IPR003441NAC domain
PfamPF023658.9E-1721166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEAAVVQEEQ HHELAPQLQF PPGYHFVPTE QELLSYLRSK IEGQEQPLAV VNEVAILDWQ  60
PGSLVEAYKG YGENKWYFFT VREPSSSNKE EEPNRKVRVP GVKATWKATG SVAPIAAARA  120
KQQDDGGKPA EEEEEEEKVI VGTKRVLIYQ SSDAEEDGKW SMHEYILKGH AKMGQYALCS  180
IQRKQHSDTV DNAGEGTSSR KRTKATNGDP GKAKKRRTTK PDTQPEGLVL QQLQRDRIHR  240
GTTETEIQDK ENCYKEKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-151718714168NO APICAL MERISTEM PROTEIN
1ut4_B6e-151718714168NO APICAL MERISTEM PROTEIN
1ut7_A6e-151718714168NO APICAL MERISTEM PROTEIN
1ut7_B6e-151718714168NO APICAL MERISTEM PROTEIN
3swm_A6e-151718717171NAC domain-containing protein 19
3swm_B6e-151718717171NAC domain-containing protein 19
3swm_C6e-151718717171NAC domain-containing protein 19
3swm_D6e-151718717171NAC domain-containing protein 19
3swp_A6e-151718717171NAC domain-containing protein 19
3swp_B6e-151718717171NAC domain-containing protein 19
3swp_C6e-151718717171NAC domain-containing protein 19
3swp_D6e-151718717171NAC domain-containing protein 19
4dul_A6e-151718714168NAC domain-containing protein 19
4dul_B6e-151718714168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199216RKRTKATNGDPGKAKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G133100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963566.11e-161NAC domain-containing protein 83
TrEMBLA0A368QEF80.0A0A368QEF8_SETIT; Uncharacterized protein
STRINGSi024612m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-15NAC-like, activated by AP3/PI