PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.3G142000.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 231aa MW: 26117.8 Da PI: 8.227

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.3G142000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.8	2.7e-11	85	171	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnH 87 fY +YA+ +GF v++ ++kk +r ++Cs+egk + k ++ + r++++ +++Cka+lk ++ + + +++ +l HnH Seita.3G142000.1.p 85 FYMRYAQLAGFGVKMCNKKKF-------SRVMRCSCEGKGDFYKGDEALRVRNKTTMKMKCKAHLKFTRVYdsegnEVDMIIENANLFHNH 168 9***********9987776.......8899*****9999999999************998864332334567888899* PP FAR1 88 ela 90 l Seita.3G142000.1.p 169 LLH 171 885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-7	85	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MLESSSTRFR TPPTQIGCQQ GSNEDQTITT GRQGVVFLPP DTLNTNQMIA SEEEIPPQTH 60 NESMDPNMIP REGMSFHTEA EAKAFYMRYA QLAGFGVKMC NKKKFSRVMR CSCEGKGDFY 120 KGDEALRVRN KTTMKMKCKA HLKFTRVYDS EGNEVDMIIE NANLFHNHLL HTPLKTKKMR 180 SHKSTEPVLY QIIDELQEAG VSTQSIKNVL QNMHGGAELV PITSRDIENR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.3G142000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368QF34	1e-173	A0A368QF34_SETIT; Uncharacterized protein
STRING	Si027404m	1e-134	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-11	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Seita.3G142000.1.p