PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G142100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 256aa    MW: 28814.7 Da    PI: 10.9005
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G142100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-172269148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd  lv++++ +G g W+  ar  g++Rt+k+c++rw++yl
  Seita.3G142100.1.p 22 KGPWTVEEDHVLVNYIAAHGEGAWNNLARAAGLNRTGKSCRLRWLNYL 69
                        79********************************************97 PP
2Myb_DNA-binding54.52.6e-1775118146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++T+eE+e++v++ +++G++ W++Ia++++ gRt++++k++w++
  Seita.3G142100.1.p  75 RGNMTAEEQERIVQLQARWGNK-WSRIAKHLP-GRTDNEVKNFWRT 118
                         89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4271769IPR017930Myb domain
SuperFamilySSF466893.95E-3020116IPR009057Homeodomain-like
SMARTSM007176.3E-132171IPR001005SANT/Myb domain
PfamPF002497.1E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-222376IPR009057Homeodomain-like
CDDcd001675.32E-92469No hitNo description
PROSITE profilePS5129424.48370124IPR017930Myb domain
SMARTSM007176.0E-1474122IPR001005SANT/Myb domain
PfamPF002495.7E-1575118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2277123IPR009057Homeodomain-like
CDDcd001674.02E-1177118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MQSAVDAVAG VEQVVPQPAV RKGPWTVEED HVLVNYIAAH GEGAWNNLAR AAGLNRTGKS  60
CRLRWLNYLR PDVRRGNMTA EEQERIVQLQ ARWGNKWSRI AKHLPGRTDN EVKNFWRTKI  120
QQKKHKNKEH SAIETIITVA GVCSGMACKD TPAITEDQGS SNYSGRTGVT QDYGIVRQQQ  180
PNISSAADYL SLRCAWRSHW RWRLGLRSGV PGRVGRELLG HRRRLWTTMQ SYQARTCSFA  240
RRGEGGFAVI RILAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251312318127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G142100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209863e-33AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAC1209903e-33AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence.
GenBankAP0149613e-33AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-33CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699923.11e-142transcription factor MYB24
TrEMBLA0A368QF260.0A0A368QF26_SETIT; Uncharacterized protein
STRINGSi024431m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.11e-60myb domain protein 24