PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.3G142700.1.p
Common NameSETIT_024214mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 231aa    MW: 23561.5 Da    PI: 8.4193
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.3G142700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20108142135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Seita.3G142700.1.p 108 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 142
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.417102138IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-20102154IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-14103142No hitNo description
Gene3DG3DSA:3.30.50.102.6E-17106142IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.57E-13107139No hitNo description
PROSITE patternPS003440108133IPR000679Zinc finger, GATA-type
PfamPF003205.1E-18108142IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MLQELALCAC GRFYAGGCGG RCAGAAAASS AFSMLFPVAV EQCYYSKEDD RSPYVGGGAV  60
DCTLSLGTPS TRRAEAGGRA RAAGGGGGGA APSCKESADR GSPPARRCAN CDTTSTPLWR  120
NGPRGPKSLC NACGIRYKKE ERRAAAAVAP APAPQDGSYA CGGYARQPPP PQWGCYGPVA  180
AAKSASFGMY GGGDVVDAAA DGPCLSWMLN VMPSSPAFAV RERPTLFQYY *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.3G142700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681231.11e-162GATA transcription factor 15
SwissprotQ9ZPX07e-31GAT20_ARATH; GATA transcription factor 20
TrEMBLK3ZCD91e-161K3ZCD9_SETIT; Uncharacterized protein
STRINGSi024214m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-25GATA transcription factor 20
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]